miRNA display CGI


Results 21 - 40 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11605 3' -58.7 NC_003085.1 + 39774 0.66 0.546805
Target:  5'- cCGCaUCACCCU-GACGcuugaguaccuccAGAAGuCGUCCa -3'
miRNA:   3'- -GCGgAGUGGGGcCUGC-------------UCUUC-GCAGG- -5'
11605 3' -58.7 NC_003085.1 + 33163 0.66 0.516852
Target:  5'- gCGCCUCuguUCCCGacagaaGAgGAGGAGCGgagauugcgCCa -3'
miRNA:   3'- -GCGGAGu--GGGGC------CUgCUCUUCGCa--------GG- -5'
11605 3' -58.7 NC_003085.1 + 32539 0.68 0.428756
Target:  5'- gGCCUUGCCCuccaCGGGCGGGGgcuGGgGUgCg -3'
miRNA:   3'- gCGGAGUGGG----GCCUGCUCU---UCgCAgG- -5'
11605 3' -58.7 NC_003085.1 + 31461 0.66 0.547849
Target:  5'- gGCCUCGCgCCguCGGACaGGAGGCagugaGUCa -3'
miRNA:   3'- gCGGAGUG-GG--GCCUGcUCUUCG-----CAGg -5'
11605 3' -58.7 NC_003085.1 + 29981 0.7 0.303725
Target:  5'- aGCagUCAuCCaCCGGAUGGGGAGCGgCCc -3'
miRNA:   3'- gCGg-AGU-GG-GGCCUGCUCUUCGCaGG- -5'
11605 3' -58.7 NC_003085.1 + 28640 0.72 0.237132
Target:  5'- uCGCCUCAUCCaGGAU----GGCGUCCa -3'
miRNA:   3'- -GCGGAGUGGGgCCUGcucuUCGCAGG- -5'
11605 3' -58.7 NC_003085.1 + 28638 0.69 0.375184
Target:  5'- gGCCUUucgauACCCCuuccuggaGGCGGGGaagGGCGUCCu -3'
miRNA:   3'- gCGGAG-----UGGGGc-------CUGCUCU---UCGCAGG- -5'
11605 3' -58.7 NC_003085.1 + 26659 0.71 0.26218
Target:  5'- gGCCgUCGCCuCCuGGGCG-GGAGCGgCCg -3'
miRNA:   3'- gCGG-AGUGG-GG-CCUGCuCUUCGCaGG- -5'
11605 3' -58.7 NC_003085.1 + 25640 0.67 0.486583
Target:  5'- gGCCgggCGCCCCgucuucaaGGACGuGGAGUacaUCCg -3'
miRNA:   3'- gCGGa--GUGGGG--------CCUGCuCUUCGc--AGG- -5'
11605 3' -58.7 NC_003085.1 + 25416 0.76 0.129489
Target:  5'- gCGCUUCGCCaggCGGGCGAGGauGGCGUUg -3'
miRNA:   3'- -GCGGAGUGGg--GCCUGCUCU--UCGCAGg -5'
11605 3' -58.7 NC_003085.1 + 24658 0.67 0.486583
Target:  5'- aGCCgCGCgCCGcGACGGGcuGAGCGgcaCCa -3'
miRNA:   3'- gCGGaGUGgGGC-CUGCUC--UUCGCa--GG- -5'
11605 3' -58.7 NC_003085.1 + 24634 0.72 0.231191
Target:  5'- gCGCUUCACCUCGG-CGgaGGAGGCGaaccucggcuUCCg -3'
miRNA:   3'- -GCGGAGUGGGGCCuGC--UCUUCGC----------AGG- -5'
11605 3' -58.7 NC_003085.1 + 24615 0.69 0.383794
Target:  5'- uGCCg-GCCCa-GGCGAGAaucugcgccucGGCGUCCu -3'
miRNA:   3'- gCGGagUGGGgcCUGCUCU-----------UCGCAGG- -5'
11605 3' -58.7 NC_003085.1 + 22889 0.66 0.558314
Target:  5'- cCGCCggACUCCGGuGCGuc-GGCGUUCg -3'
miRNA:   3'- -GCGGagUGGGGCC-UGCucuUCGCAGG- -5'
11605 3' -58.7 NC_003085.1 + 22414 0.66 0.547849
Target:  5'- aGUCcaucgaggUgACCCCGGAcuaccaguccguCGAGGAGCG-CCa -3'
miRNA:   3'- gCGG--------AgUGGGGCCU------------GCUCUUCGCaGG- -5'
11605 3' -58.7 NC_003085.1 + 22385 0.78 0.098491
Target:  5'- cCGCCccaACCCCGaGACGGGgcGCGUCg -3'
miRNA:   3'- -GCGGag-UGGGGC-CUGCUCuuCGCAGg -5'
11605 3' -58.7 NC_003085.1 + 21706 0.7 0.326325
Target:  5'- cCGCUUCGCCUCGGACauccAGCG-CCu -3'
miRNA:   3'- -GCGGAGUGGGGCCUGcucuUCGCaGG- -5'
11605 3' -58.7 NC_003085.1 + 21508 0.7 0.33413
Target:  5'- cCGCCccaCACCgCGGACGAGuagauGGGCaaGUCCc -3'
miRNA:   3'- -GCGGa--GUGGgGCCUGCUC-----UUCG--CAGG- -5'
11605 3' -58.7 NC_003085.1 + 21293 0.66 0.547849
Target:  5'- gCGCCUgCACUUCGuAUGAG-GGCGUCg -3'
miRNA:   3'- -GCGGA-GUGGGGCcUGCUCuUCGCAGg -5'
11605 3' -58.7 NC_003085.1 + 20827 0.67 0.486583
Target:  5'- aCGCC--AUCCUGGAUGAGGcgaccGGCG-CCg -3'
miRNA:   3'- -GCGGagUGGGGCCUGCUCU-----UCGCaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.