Results 1 - 20 of 44 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11606 | 3' | -55.2 | NC_003085.1 | + | 26722 | 0.66 | 0.636567 |
Target: 5'- -gGgcGGUGAC-GGCGCGG-CGCCGg -3' miRNA: 3'- gaCuuCCGCUGaCCGUGUCaGUGGUg -5' |
|||||||
11606 | 3' | -55.2 | NC_003085.1 | + | 31182 | 0.67 | 0.601842 |
Target: 5'- -gGuAGGGCGGaaGGCcucauugGCGGUUACCGCg -3' miRNA: 3'- gaC-UUCCGCUgaCCG-------UGUCAGUGGUG- -5' |
|||||||
11606 | 3' | -55.2 | NC_003085.1 | + | 9138 | 0.67 | 0.602959 |
Target: 5'- uCUGGGaGCGGCaccUGGCGgAGcUCGCCGCc -3' miRNA: 3'- -GACUUcCGCUG---ACCGUgUC-AGUGGUG- -5' |
|||||||
11606 | 3' | -55.2 | NC_003085.1 | + | 16458 | 0.67 | 0.602959 |
Target: 5'- --cGAGGCGAC-GGCAguGUCcgaccugcgcGCCGCc -3' miRNA: 3'- gacUUCCGCUGaCCGUguCAG----------UGGUG- -5' |
|||||||
11606 | 3' | -55.2 | NC_003085.1 | + | 23112 | 0.67 | 0.614149 |
Target: 5'- cCUGA--GCGAggcGGCGCAG-CACCGCa -3' miRNA: 3'- -GACUucCGCUga-CCGUGUCaGUGGUG- -5' |
|||||||
11606 | 3' | -55.2 | NC_003085.1 | + | 33556 | 0.67 | 0.625354 |
Target: 5'- aUGAGGGUucGAUUGGCuguuccgccuggACAcGUCACUACc -3' miRNA: 3'- gACUUCCG--CUGACCG------------UGU-CAGUGGUG- -5' |
|||||||
11606 | 3' | -55.2 | NC_003085.1 | + | 36450 | 0.67 | 0.625354 |
Target: 5'- -gGAGGGCGGCgccucaUGGCGaGGUaguGCCACu -3' miRNA: 3'- gaCUUCCGCUG------ACCGUgUCAg--UGGUG- -5' |
|||||||
11606 | 3' | -55.2 | NC_003085.1 | + | 2075 | 0.67 | 0.625354 |
Target: 5'- -cGGAcGGUGACgcgacGaGCGCAGcCGCCGCa -3' miRNA: 3'- gaCUU-CCGCUGa----C-CGUGUCaGUGGUG- -5' |
|||||||
11606 | 3' | -55.2 | NC_003085.1 | + | 3993 | 0.67 | 0.625354 |
Target: 5'- -cGAGcGCGACacGGCACAGUgGCC-Ca -3' miRNA: 3'- gaCUUcCGCUGa-CCGUGUCAgUGGuG- -5' |
|||||||
11606 | 3' | -55.2 | NC_003085.1 | + | 25017 | 0.67 | 0.591796 |
Target: 5'- -aGAAGGCGccGCUgGGCACcaUCACCcGCg -3' miRNA: 3'- gaCUUCCGC--UGA-CCGUGucAGUGG-UG- -5' |
|||||||
11606 | 3' | -55.2 | NC_003085.1 | + | 18685 | 0.67 | 0.580667 |
Target: 5'- gCUGAGGGUGACgccGGU-CAGUgGCC-Cg -3' miRNA: 3'- -GACUUCCGCUGa--CCGuGUCAgUGGuG- -5' |
|||||||
11606 | 3' | -55.2 | NC_003085.1 | + | 7272 | 0.68 | 0.515115 |
Target: 5'- gUGAAGGaGACgUGGCGCAc-CGCCGCc -3' miRNA: 3'- gACUUCCgCUG-ACCGUGUcaGUGGUG- -5' |
|||||||
11606 | 3' | -55.2 | NC_003085.1 | + | 48863 | 0.74 | 0.232601 |
Target: 5'- -aGGccGCGACgGGCuuGCAGUCGCCGCa -3' miRNA: 3'- gaCUucCGCUGaCCG--UGUCAGUGGUG- -5' |
|||||||
11606 | 3' | -55.2 | NC_003085.1 | + | 20834 | 0.74 | 0.232601 |
Target: 5'- cCUGGaugAGGCGACcGGCGCcgAGcUCGCCGCu -3' miRNA: 3'- -GACU---UCCGCUGaCCGUG--UC-AGUGGUG- -5' |
|||||||
11606 | 3' | -55.2 | NC_003085.1 | + | 5322 | 0.72 | 0.325288 |
Target: 5'- cCUGAAGGCGACcgagaaGCGC-GUgGCCGCg -3' miRNA: 3'- -GACUUCCGCUGac----CGUGuCAgUGGUG- -5' |
|||||||
11606 | 3' | -55.2 | NC_003085.1 | + | 32139 | 0.71 | 0.358846 |
Target: 5'- -cGggGGCGGCuggUGGCGCGGUggguUACgGCg -3' miRNA: 3'- gaCuuCCGCUG---ACCGUGUCA----GUGgUG- -5' |
|||||||
11606 | 3' | -55.2 | NC_003085.1 | + | 42740 | 0.71 | 0.393826 |
Target: 5'- --cGGGGCGAUgcgGGCGCGGuggacggcauccaUCGCCGCg -3' miRNA: 3'- gacUUCCGCUGa--CCGUGUC-------------AGUGGUG- -5' |
|||||||
11606 | 3' | -55.2 | NC_003085.1 | + | 17665 | 0.7 | 0.4329 |
Target: 5'- -gGGAGGCG-CUGGCGCuGagACCGa -3' miRNA: 3'- gaCUUCCGCuGACCGUGuCagUGGUg -5' |
|||||||
11606 | 3' | -55.2 | NC_003085.1 | + | 15524 | 0.69 | 0.483456 |
Target: 5'- uUGAA-GCGACUGGCGCAGgcgguugaGCC-Cg -3' miRNA: 3'- gACUUcCGCUGACCGUGUCag------UGGuG- -5' |
|||||||
11606 | 3' | -55.2 | NC_003085.1 | + | 34039 | 0.69 | 0.504464 |
Target: 5'- -cGGAuGGUGAC-GGCAUAcUCACCGCu -3' miRNA: 3'- gaCUU-CCGCUGaCCGUGUcAGUGGUG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home