miRNA display CGI


Results 1 - 20 of 46 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11615 3' -57.2 NC_003085.1 + 24758 0.66 0.626126
Target:  5'- gCGAAG-CCgccgaUGCCGccGUCCAgCACCa -3'
miRNA:   3'- -GCUUCaGGa----GCGGCcuCAGGUgGUGG- -5'
11615 3' -57.2 NC_003085.1 + 39308 0.66 0.626126
Target:  5'- --cGGUCCUCG-CGGuacUCC-CCGCCg -3'
miRNA:   3'- gcuUCAGGAGCgGCCuc-AGGuGGUGG- -5'
11615 3' -57.2 NC_003085.1 + 5701 0.66 0.615323
Target:  5'- -uGAGUCCaaGCCcGcGcCCACCACCg -3'
miRNA:   3'- gcUUCAGGagCGGcCuCaGGUGGUGG- -5'
11615 3' -57.2 NC_003085.1 + 45059 0.66 0.615323
Target:  5'- ----cUCCUcCGCCGGcuGUCCGguauCCGCCg -3'
miRNA:   3'- gcuucAGGA-GCGGCCu-CAGGU----GGUGG- -5'
11615 3' -57.2 NC_003085.1 + 29666 0.66 0.615323
Target:  5'- aGAAGUCa-UGUCGGGcGUCCACC-UCg -3'
miRNA:   3'- gCUUCAGgaGCGGCCU-CAGGUGGuGG- -5'
11615 3' -57.2 NC_003085.1 + 23791 0.66 0.614244
Target:  5'- gCGAAuucGUCCg-GCCGGuagucgcAGUCCGCagCACCg -3'
miRNA:   3'- -GCUU---CAGGagCGGCC-------UCAGGUG--GUGG- -5'
11615 3' -57.2 NC_003085.1 + 10259 0.66 0.604535
Target:  5'- gGggGUCCguaCCGGAG-CCugCguuGCCg -3'
miRNA:   3'- gCuuCAGGagcGGCCUCaGGugG---UGG- -5'
11615 3' -57.2 NC_003085.1 + 21825 0.66 0.601302
Target:  5'- gCGgcGUCC-CGCUGGcggcgagccccccaGGcUCCACaCACCg -3'
miRNA:   3'- -GCuuCAGGaGCGGCC--------------UC-AGGUG-GUGG- -5'
11615 3' -57.2 NC_003085.1 + 31157 0.66 0.593769
Target:  5'- uCGGAcggCCagCGCCGGGgcGUgCACCGCCc -3'
miRNA:   3'- -GCUUca-GGa-GCGGCCU--CAgGUGGUGG- -5'
11615 3' -57.2 NC_003085.1 + 12645 0.66 0.583035
Target:  5'- aCGGAGUUgcgugucgcgCUCGCCGGAGUggagaCGCUgaugaugacGCCg -3'
miRNA:   3'- -GCUUCAG----------GAGCGGCCUCAg----GUGG---------UGG- -5'
11615 3' -57.2 NC_003085.1 + 31004 0.67 0.57234
Target:  5'- uGAAGUCCacgCGCUccuccaGGAcGUCCACgACg -3'
miRNA:   3'- gCUUCAGGa--GCGG------CCU-CAGGUGgUGg -5'
11615 3' -57.2 NC_003085.1 + 40385 0.67 0.57234
Target:  5'- uGGAGccgCaCUUGCUGGGG-CCgaACCACCa -3'
miRNA:   3'- gCUUCa--G-GAGCGGCCUCaGG--UGGUGG- -5'
11615 3' -57.2 NC_003085.1 + 42693 0.67 0.57234
Target:  5'- gGAAGggcUCUCGCCG---UCCGCCACg -3'
miRNA:   3'- gCUUCa--GGAGCGGCcucAGGUGGUGg -5'
11615 3' -57.2 NC_003085.1 + 1013 0.67 0.565945
Target:  5'- uGAGGUggccuaugcucgcggCCUCGCCguccaugcGGAGgaagCCAgCGCCg -3'
miRNA:   3'- gCUUCA---------------GGAGCGG--------CCUCa---GGUgGUGG- -5'
11615 3' -57.2 NC_003085.1 + 6157 0.67 0.561692
Target:  5'- aCGA--UgCUCGCCGGAcGUUCAUCAgCCu -3'
miRNA:   3'- -GCUucAgGAGCGGCCU-CAGGUGGU-GG- -5'
11615 3' -57.2 NC_003085.1 + 10089 0.67 0.561692
Target:  5'- -uGAGcCCcCGCCGGcGUCggaACCGCCg -3'
miRNA:   3'- gcUUCaGGaGCGGCCuCAGg--UGGUGG- -5'
11615 3' -57.2 NC_003085.1 + 49337 0.67 0.558508
Target:  5'- ---cGUCC-CGCCcucuccccacauugGGGGcCCGCCGCCc -3'
miRNA:   3'- gcuuCAGGaGCGG--------------CCUCaGGUGGUGG- -5'
11615 3' -57.2 NC_003085.1 + 40471 0.67 0.551099
Target:  5'- aGGuAGUCCUCuaccggGCCGGugaAGUCCGCgagGCCg -3'
miRNA:   3'- gCU-UCAGGAG------CGGCC---UCAGGUGg--UGG- -5'
11615 3' -57.2 NC_003085.1 + 8753 0.67 0.540568
Target:  5'- aGAGGUCCa--CCGGcgcGUCCAgCACCc -3'
miRNA:   3'- gCUUCAGGagcGGCCu--CAGGUgGUGG- -5'
11615 3' -57.2 NC_003085.1 + 25759 0.67 0.531148
Target:  5'- aCGAGGcauUCCUCGCgGGcaAGUCCGacgugcagguggggaCGCCg -3'
miRNA:   3'- -GCUUC---AGGAGCGgCC--UCAGGUg--------------GUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.