miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11615 5' -56.8 NC_003085.1 + 42111 0.66 0.629828
Target:  5'- aGCGGCGcccaggGGCGcGUGuagcCCGCGUCCUc -3'
miRNA:   3'- -CGCUGCua----CUGC-CACc---GGUGCAGGAa -5'
11615 5' -56.8 NC_003085.1 + 8499 0.66 0.629828
Target:  5'- uGCGAgCGcUGGCGG-GGCCACaGggacgCCUg -3'
miRNA:   3'- -CGCU-GCuACUGCCaCCGGUG-Ca----GGAa -5'
11615 5' -56.8 NC_003085.1 + 2646 0.66 0.629828
Target:  5'- gGCGGCGAggUGAUGccgcccaaggacGUGGCCACcGUCa-- -3'
miRNA:   3'- -CGCUGCU--ACUGC------------CACCGGUG-CAGgaa -5'
11615 5' -56.8 NC_003085.1 + 23313 0.66 0.618863
Target:  5'- cGCGACGu---CGGUGGCCAgcaGcCCg- -3'
miRNA:   3'- -CGCUGCuacuGCCACCGGUg--CaGGaa -5'
11615 5' -56.8 NC_003085.1 + 38271 0.66 0.618863
Target:  5'- cGCGACGAcGACGGaUGG-CGCGagCUc -3'
miRNA:   3'- -CGCUGCUaCUGCC-ACCgGUGCagGAa -5'
11615 5' -56.8 NC_003085.1 + 34014 0.66 0.60791
Target:  5'- cGCGGCGAUGAUucaGGgauaccGCuCGCGUCCc- -3'
miRNA:   3'- -CGCUGCUACUG---CCac----CG-GUGCAGGaa -5'
11615 5' -56.8 NC_003085.1 + 38234 0.66 0.596977
Target:  5'- uCGACGGcagcacgucGGCGGUGGCCACcuacuUCCg- -3'
miRNA:   3'- cGCUGCUa--------CUGCCACCGGUGc----AGGaa -5'
11615 5' -56.8 NC_003085.1 + 32036 0.66 0.596977
Target:  5'- gGCG-CGGUGAUGGgGGCgGCGaguggCCUg -3'
miRNA:   3'- -CGCuGCUACUGCCaCCGgUGCa----GGAa -5'
11615 5' -56.8 NC_003085.1 + 25362 0.66 0.590431
Target:  5'- -gGACGGUGACGGgcacgccgacggcgGGCUucaccguCGUCCa- -3'
miRNA:   3'- cgCUGCUACUGCCa-------------CCGGu------GCAGGaa -5'
11615 5' -56.8 NC_003085.1 + 2501 0.66 0.586074
Target:  5'- gGCGugGcugacgGACGGUGuGCCcGCGUCg-- -3'
miRNA:   3'- -CGCugCua----CUGCCAC-CGG-UGCAGgaa -5'
11615 5' -56.8 NC_003085.1 + 16166 0.66 0.586074
Target:  5'- cGUGACGccG-UGGUGGCCGCG-CUg- -3'
miRNA:   3'- -CGCUGCuaCuGCCACCGGUGCaGGaa -5'
11615 5' -56.8 NC_003085.1 + 20141 0.66 0.575209
Target:  5'- cGCGGCGGUGcccuguccaauaGCGcUGGCCAUGgCCg- -3'
miRNA:   3'- -CGCUGCUAC------------UGCcACCGGUGCaGGaa -5'
11615 5' -56.8 NC_003085.1 + 48527 0.66 0.575209
Target:  5'- gGCGGCGAgGGCGcG-GGCCuuccaGUCCUc -3'
miRNA:   3'- -CGCUGCUaCUGC-CaCCGGug---CAGGAa -5'
11615 5' -56.8 NC_003085.1 + 47316 0.67 0.564391
Target:  5'- -gGACGucaugaGGCGGgGGCCGcCGUCCUc -3'
miRNA:   3'- cgCUGCua----CUGCCaCCGGU-GCAGGAa -5'
11615 5' -56.8 NC_003085.1 + 47985 0.67 0.563312
Target:  5'- gGCGACGGUGACGGgcGGCgACuugggguGUCa-- -3'
miRNA:   3'- -CGCUGCUACUGCCa-CCGgUG-------CAGgaa -5'
11615 5' -56.8 NC_003085.1 + 7703 0.67 0.542925
Target:  5'- cGCGAgGGUGACGucaugaaGCCAUGUCCc- -3'
miRNA:   3'- -CGCUgCUACUGCcac----CGGUGCAGGaa -5'
11615 5' -56.8 NC_003085.1 + 20094 0.67 0.532291
Target:  5'- aUGGCGuucUGcCGGgcGGCCAUGUCCUg -3'
miRNA:   3'- cGCUGCu--ACuGCCa-CCGGUGCAGGAa -5'
11615 5' -56.8 NC_003085.1 + 42177 0.67 0.521734
Target:  5'- cCGuCGAgcuuggcGGCGGUGcGCCACGUCUc- -3'
miRNA:   3'- cGCuGCUa------CUGCCAC-CGGUGCAGGaa -5'
11615 5' -56.8 NC_003085.1 + 23598 0.68 0.505016
Target:  5'- gGCGGCGAguugcucGACGGUgacgauuuugaaguaGGCCAgGUUCUc -3'
miRNA:   3'- -CGCUGCUa------CUGCCA---------------CCGGUgCAGGAa -5'
11615 5' -56.8 NC_003085.1 + 35183 0.68 0.500872
Target:  5'- cGCGGCGcuUGACGGcagcagccUGGCCgcACGUCUc- -3'
miRNA:   3'- -CGCUGCu-ACUGCC--------ACCGG--UGCAGGaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.