Results 1 - 20 of 56 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11651 | 3' | -49.3 | NC_003102.1 | + | 10767 | 1.07 | 0.015911 |
Target: 5'- aAACCCGACUACGAAAAGUCAGACACGu -3' miRNA: 3'- -UUGGGCUGAUGCUUUUCAGUCUGUGC- -5' |
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11651 | 3' | -49.3 | NC_003102.1 | + | 121848 | 1.02 | 0.030122 |
Target: 5'- aAACCUGACUACGAAAAGUCAGACACGu -3' miRNA: 3'- -UUGGGCUGAUGCUUUUCAGUCUGUGC- -5' |
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11651 | 3' | -49.3 | NC_003102.1 | + | 26225 | 0.98 | 0.053515 |
Target: 5'- aAACCCGACUACGAAAAGUCAGACAa- -3' miRNA: 3'- -UUGGGCUGAUGCUUUUCAGUCUGUgc -5' |
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11651 | 3' | -49.3 | NC_003102.1 | + | 26142 | 0.98 | 0.053515 |
Target: 5'- aAACCCGACUACGAAAAGUCAGACAa- -3' miRNA: 3'- -UUGGGCUGAUGCUUUUCAGUCUGUgc -5' |
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11651 | 3' | -49.3 | NC_003102.1 | + | 97988 | 0.86 | 0.280615 |
Target: 5'- aAACCCGuCUAUGAAAAGUCAGACAa- -3' miRNA: 3'- -UUGGGCuGAUGCUUUUCAGUCUGUgc -5' |
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11651 | 3' | -49.3 | NC_003102.1 | + | 10686 | 0.86 | 0.280615 |
Target: 5'- aAGCCaUGuCUACGAAAAGUCAGACACGu -3' miRNA: 3'- -UUGG-GCuGAUGCUUUUCAGUCUGUGC- -5' |
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11651 | 3' | -49.3 | NC_003102.1 | + | 97931 | 0.86 | 0.280615 |
Target: 5'- aAACCCGuCUAUGAAAAGUCAGACAa- -3' miRNA: 3'- -UUGGGCuGAUGCUUUUCAGUCUGUgc -5' |
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11651 | 3' | -49.3 | NC_003102.1 | + | 26751 | 0.85 | 0.317097 |
Target: 5'- aAACUCGACacguccACGAAAAGUCAGACACGu -3' miRNA: 3'- -UUGGGCUGa-----UGCUUUUCAGUCUGUGC- -5' |
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11651 | 3' | -49.3 | NC_003102.1 | + | 10608 | 0.84 | 0.348774 |
Target: 5'- aAACCCGA-UACGAAAAGUCAGACAa- -3' miRNA: 3'- -UUGGGCUgAUGCUUUUCAGUCUGUgc -5' |
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11651 | 3' | -49.3 | NC_003102.1 | + | 97874 | 0.81 | 0.466381 |
Target: 5'- aAACCUGuCUAUGAAAAGUCAGACAa- -3' miRNA: 3'- -UUGGGCuGAUGCUUUUCAGUCUGUgc -5' |
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11651 | 3' | -49.3 | NC_003102.1 | + | 103556 | 0.8 | 0.548076 |
Target: 5'- uGACCauCGACauguccGCGAAAAGUCAGACACGu -3' miRNA: 3'- -UUGG--GCUGa-----UGCUUUUCAGUCUGUGC- -5' |
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11651 | 3' | -49.3 | NC_003102.1 | + | 112532 | 0.79 | 0.579925 |
Target: 5'- gAGCUCG-CguccACGAAAAGUCAGACACGu -3' miRNA: 3'- -UUGGGCuGa---UGCUUUUCAGUCUGUGC- -5' |
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11651 | 3' | -49.3 | NC_003102.1 | + | 112619 | 0.79 | 0.601378 |
Target: 5'- -uCCaCGACUAUaAAAAGUCAGACACGu -3' miRNA: 3'- uuGG-GCUGAUGcUUUUCAGUCUGUGC- -5' |
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11651 | 3' | -49.3 | NC_003102.1 | + | 104308 | 0.79 | 0.612146 |
Target: 5'- aAGCCauCGACacguccACGAAAAGUCAGACACGu -3' miRNA: 3'- -UUGG--GCUGa-----UGCUUUUCAGUCUGUGC- -5' |
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11651 | 3' | -49.3 | NC_003102.1 | + | 26003 | 0.78 | 0.644517 |
Target: 5'- uAACCUGuuUACGAAAAGUCGGcCACGu -3' miRNA: 3'- -UUGGGCugAUGCUUUUCAGUCuGUGC- -5' |
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11651 | 3' | -49.3 | NC_003102.1 | + | 103615 | 0.77 | 0.698114 |
Target: 5'- uGACCauCGACauguucACGAAAAGUCGGACGCGu -3' miRNA: 3'- -UUGG--GCUGa-----UGCUUUUCAGUCUGUGC- -5' |
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11651 | 3' | -49.3 | NC_003102.1 | + | 103506 | 0.77 | 0.708691 |
Target: 5'- ---aCGugUccGCGAAAAGUCAGACACGu -3' miRNA: 3'- uuggGCugA--UGCUUUUCAGUCUGUGC- -5' |
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11651 | 3' | -49.3 | NC_003102.1 | + | 56050 | 0.76 | 0.729616 |
Target: 5'- aAACauGuuUACGAAAAGUCAGACACGu -3' miRNA: 3'- -UUGggCugAUGCUUUUCAGUCUGUGC- -5' |
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11651 | 3' | -49.3 | NC_003102.1 | + | 26304 | 0.76 | 0.750167 |
Target: 5'- --aUCGACauguuaACGAAAAGUCAGACACGu -3' miRNA: 3'- uugGGCUGa-----UGCUUUUCAGUCUGUGC- -5' |
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11651 | 3' | -49.3 | NC_003102.1 | + | 26083 | 0.76 | 0.770255 |
Target: 5'- aAACgCGuCUACaAAAAGUCAGACACGu -3' miRNA: 3'- -UUGgGCuGAUGcUUUUCAGUCUGUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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