miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11651 3' -49.3 NC_003102.1 + 47263 0.66 0.996558
Target:  5'- -uCCC-ACacGCGAAAuAGUCAGGCGCGu -3'
miRNA:   3'- uuGGGcUGa-UGCUUU-UCAGUCUGUGC- -5'
11651 3' -49.3 NC_003102.1 + 104485 0.7 0.953243
Target:  5'- cAACCC----ACGAAAAGUCuGACACGu -3'
miRNA:   3'- -UUGGGcugaUGCUUUUCAGuCUGUGC- -5'
11651 3' -49.3 NC_003102.1 + 132029 0.68 0.983546
Target:  5'- uACCCa---ACGAAAAGUCAGACAa- -3'
miRNA:   3'- uUGGGcugaUGCUUUUCAGUCUGUgc -5'
11651 3' -49.3 NC_003102.1 + 89479 0.68 0.988725
Target:  5'- ----aGAC-ACGAAAAGUCAGACAgGu -3'
miRNA:   3'- uugggCUGaUGCUUUUCAGUCUGUgC- -5'
11651 3' -49.3 NC_003102.1 + 113115 0.67 0.991402
Target:  5'- cGACCCGACguggugUACaaGAGAGUCAGAaacguCGCGg -3'
miRNA:   3'- -UUGGGCUG------AUGc-UUUUCAGUCU-----GUGC- -5'
11651 3' -49.3 NC_003102.1 + 103441 0.67 0.991402
Target:  5'- ---aUGGCgcaauaacguCGAAAAGUCAGACACGu -3'
miRNA:   3'- uuggGCUGau--------GCUUUUCAGUCUGUGC- -5'
11651 3' -49.3 NC_003102.1 + 89401 0.67 0.992537
Target:  5'- uACuuGuuUaaaacAUGAAAAGUCAGACACGu -3'
miRNA:   3'- uUGggCugA-----UGCUUUUCAGUCUGUGC- -5'
11651 3' -49.3 NC_003102.1 + 7684 0.66 0.995945
Target:  5'- cGCCCGAgaCUugGAAAAGUCuGAa--- -3'
miRNA:   3'- uUGGGCU--GAugCUUUUCAGuCUgugc -5'
11651 3' -49.3 NC_003102.1 + 96406 0.66 0.996323
Target:  5'- uACCCGAUcaaagugugcaugGCGAuuccAAAGUgAGACGCGu -3'
miRNA:   3'- uUGGGCUGa------------UGCU----UUUCAgUCUGUGC- -5'
11651 3' -49.3 NC_003102.1 + 61347 0.7 0.953243
Target:  5'- ----aGACUuaaaGAAAAGUCAGACACGu -3'
miRNA:   3'- uugggCUGAug--CUUUUCAGUCUGUGC- -5'
11651 3' -49.3 NC_003102.1 + 137281 0.72 0.923342
Target:  5'- uAACauGuCcACGAAAAGUCAGACACGu -3'
miRNA:   3'- -UUGggCuGaUGCUUUUCAGUCUGUGC- -5'
11651 3' -49.3 NC_003102.1 + 137204 0.72 0.923342
Target:  5'- uAACauGuCcACGAAAAGUCAGACACGu -3'
miRNA:   3'- -UUGggCuGaUGCUUUUCAGUCUGUGC- -5'
11651 3' -49.3 NC_003102.1 + 112532 0.79 0.579925
Target:  5'- gAGCUCG-CguccACGAAAAGUCAGACACGu -3'
miRNA:   3'- -UUGGGCuGa---UGCUUUUCAGUCUGUGC- -5'
11651 3' -49.3 NC_003102.1 + 112619 0.79 0.601378
Target:  5'- -uCCaCGACUAUaAAAAGUCAGACACGu -3'
miRNA:   3'- uuGG-GCUGAUGcUUUUCAGUCUGUGC- -5'
11651 3' -49.3 NC_003102.1 + 104308 0.79 0.612146
Target:  5'- aAGCCauCGACacguccACGAAAAGUCAGACACGu -3'
miRNA:   3'- -UUGG--GCUGa-----UGCUUUUCAGUCUGUGC- -5'
11651 3' -49.3 NC_003102.1 + 103615 0.77 0.698114
Target:  5'- uGACCauCGACauguucACGAAAAGUCGGACGCGu -3'
miRNA:   3'- -UUGG--GCUGa-----UGCUUUUCAGUCUGUGC- -5'
11651 3' -49.3 NC_003102.1 + 103506 0.77 0.708691
Target:  5'- ---aCGugUccGCGAAAAGUCAGACACGu -3'
miRNA:   3'- uuggGCugA--UGCUUUUCAGUCUGUGC- -5'
11651 3' -49.3 NC_003102.1 + 56050 0.76 0.729616
Target:  5'- aAACauGuuUACGAAAAGUCAGACACGu -3'
miRNA:   3'- -UUGggCugAUGCUUUUCAGUCUGUGC- -5'
11651 3' -49.3 NC_003102.1 + 55942 0.73 0.886871
Target:  5'- aAACuuGuGCaaaaauuuuauauguUACGAAAAGUCAGACACGu -3'
miRNA:   3'- -UUGggC-UG---------------AUGCUUUUCAGUCUGUGC- -5'
11651 3' -49.3 NC_003102.1 + 137127 0.73 0.891166
Target:  5'- aGACauGuCcACGAAAAGUCAGACACGu -3'
miRNA:   3'- -UUGggCuGaUGCUUUUCAGUCUGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.