miRNA display CGI


Results 21 - 40 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11651 3' -49.3 NC_003102.1 + 55942 0.73 0.886871
Target:  5'- aAACuuGuGCaaaaauuuuauauguUACGAAAAGUCAGACACGu -3'
miRNA:   3'- -UUGggC-UG---------------AUGCUUUUCAGUCUGUGC- -5'
11651 3' -49.3 NC_003102.1 + 137127 0.73 0.891166
Target:  5'- aGACauGuCcACGAAAAGUCAGACACGu -3'
miRNA:   3'- -UUGggCuGaUGCUUUUCAGUCUGUGC- -5'
11651 3' -49.3 NC_003102.1 + 137204 0.72 0.923342
Target:  5'- uAACauGuCcACGAAAAGUCAGACACGu -3'
miRNA:   3'- -UUGggCuGaUGCUUUUCAGUCUGUGC- -5'
11651 3' -49.3 NC_003102.1 + 26361 0.69 0.971182
Target:  5'- aAACauGuuaACGAAAAGUCAGACACGu -3'
miRNA:   3'- -UUGggCugaUGCUUUUCAGUCUGUGC- -5'
11651 3' -49.3 NC_003102.1 + 130829 0.7 0.957319
Target:  5'- cGCuuGACUACGAAAauGGUUAcGGCGCc -3'
miRNA:   3'- uUGggCUGAUGCUUU--UCAGU-CUGUGc -5'
11651 3' -49.3 NC_003102.1 + 89602 0.71 0.948914
Target:  5'- ----aGuuUACGAAAAGUCGGACACGu -3'
miRNA:   3'- uugggCugAUGCUUUUCAGUCUGUGC- -5'
11651 3' -49.3 NC_003102.1 + 67152 0.71 0.934364
Target:  5'- uACaaGAgUaguuaACGAAAAGUCAGACACGu -3'
miRNA:   3'- uUGggCUgA-----UGCUUUUCAGUCUGUGC- -5'
11651 3' -49.3 NC_003102.1 + 67442 0.72 0.917432
Target:  5'- --gCCGACUuuaaacauguuuGCaAAAAGUCAGACACGu -3'
miRNA:   3'- uugGGCUGA------------UGcUUUUCAGUCUGUGC- -5'
11651 3' -49.3 NC_003102.1 + 20793 0.73 0.891166
Target:  5'- uAAUCgCGACUACGAcgacgacGAGUUGGACGCGa -3'
miRNA:   3'- -UUGG-GCUGAUGCUu------UUCAGUCUGUGC- -5'
11651 3' -49.3 NC_003102.1 + 89676 0.73 0.868802
Target:  5'- cACCaGAuuCUACGAAAAGUCAGcCACGu -3'
miRNA:   3'- uUGGgCU--GAUGCUUUUCAGUCuGUGC- -5'
11651 3' -49.3 NC_003102.1 + 114739 0.67 0.99355
Target:  5'- aAACUCGACUA-GAAcauAGUCuGGACACa -3'
miRNA:   3'- -UUGGGCUGAUgCUUu--UCAG-UCUGUGc -5'
11651 3' -49.3 NC_003102.1 + 121928 0.67 0.995245
Target:  5'- aAACgCGuuUAUGAAAAGUCAaACACGu -3'
miRNA:   3'- -UUGgGCugAUGCUUUUCAGUcUGUGC- -5'
11651 3' -49.3 NC_003102.1 + 42934 0.67 0.995245
Target:  5'- ---aUGGCgcaauaacauCGAAAAGUCAGACGCGu -3'
miRNA:   3'- uuggGCUGau--------GCUUUUCAGUCUGUGC- -5'
11651 3' -49.3 NC_003102.1 + 121806 0.66 0.996558
Target:  5'- --gCCGACUuuuCGAuAAGUCAucGACAUGu -3'
miRNA:   3'- uugGGCUGAu--GCUuUUCAGU--CUGUGC- -5'
11651 3' -49.3 NC_003102.1 + 61651 0.66 0.996558
Target:  5'- aGGCCCaaacGAUgauCGAGuaauugaaacAAGUCAGACGCGu -3'
miRNA:   3'- -UUGGG----CUGau-GCUU----------UUCAGUCUGUGC- -5'
11651 3' -49.3 NC_003102.1 + 58821 0.66 0.997093
Target:  5'- gAugCCGACUGCGAcggcGAcGUCGacgacGACACc -3'
miRNA:   3'- -UugGGCUGAUGCU----UUuCAGU-----CUGUGc -5'
11651 3' -49.3 NC_003102.1 + 36641 0.66 0.997093
Target:  5'- cACCCGACaacauuUACaAAGAGUucaaCAGACACa -3'
miRNA:   3'- uUGGGCUG------AUGcUUUUCA----GUCUGUGc -5'
11651 3' -49.3 NC_003102.1 + 61755 0.66 0.997557
Target:  5'- -gUCaGACUACGAAaacguucaGAGaUCGGACACGu -3'
miRNA:   3'- uuGGgCUGAUGCUU--------UUC-AGUCUGUGC- -5'
11651 3' -49.3 NC_003102.1 + 16602 0.66 0.99792
Target:  5'- cGCCgCGACUGCGGAGAaUCgcggcgaucaaccAGACGCc -3'
miRNA:   3'- uUGG-GCUGAUGCUUUUcAG-------------UCUGUGc -5'
11651 3' -49.3 NC_003102.1 + 10767 1.07 0.015911
Target:  5'- aAACCCGACUACGAAAAGUCAGACACGu -3'
miRNA:   3'- -UUGGGCUGAUGCUUUUCAGUCUGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.