miRNA display CGI


Results 21 - 40 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11651 3' -49.3 NC_003102.1 + 137326 0.74 0.852701
Target:  5'- ---aCGGCUAUGAAAAGUCGGcCGCGu -3'
miRNA:   3'- uuggGCUGAUGCUUUUCAGUCuGUGC- -5'
11651 3' -49.3 NC_003102.1 + 137402 0.74 0.852701
Target:  5'- ---aCGGCUAUGAAAAGUCGGcCGCGu -3'
miRNA:   3'- uuggGCUGAUGCUUUUCAGUCuGUGC- -5'
11651 3' -49.3 NC_003102.1 + 89427 0.74 0.852701
Target:  5'- aAACauGuCUAUGAAAAGUCAGACAUGu -3'
miRNA:   3'- -UUGggCuGAUGCUUUUCAGUCUGUGC- -5'
11651 3' -49.3 NC_003102.1 + 89676 0.73 0.868802
Target:  5'- cACCaGAuuCUACGAAAAGUCAGcCACGu -3'
miRNA:   3'- uUGGgCU--GAUGCUUUUCAGUCuGUGC- -5'
11651 3' -49.3 NC_003102.1 + 55942 0.73 0.886871
Target:  5'- aAACuuGuGCaaaaauuuuauauguUACGAAAAGUCAGACACGu -3'
miRNA:   3'- -UUGggC-UG---------------AUGCUUUUCAGUCUGUGC- -5'
11651 3' -49.3 NC_003102.1 + 137127 0.73 0.891166
Target:  5'- aGACauGuCcACGAAAAGUCAGACACGu -3'
miRNA:   3'- -UUGggCuGaUGCUUUUCAGUCUGUGC- -5'
11651 3' -49.3 NC_003102.1 + 20793 0.73 0.891166
Target:  5'- uAAUCgCGACUACGAcgacgacGAGUUGGACGCGa -3'
miRNA:   3'- -UUGG-GCUGAUGCUu------UUCAGUCUGUGC- -5'
11651 3' -49.3 NC_003102.1 + 67442 0.72 0.917432
Target:  5'- --gCCGACUuuaaacauguuuGCaAAAAGUCAGACACGu -3'
miRNA:   3'- uugGGCUGA------------UGcUUUUCAGUCUGUGC- -5'
11651 3' -49.3 NC_003102.1 + 137281 0.72 0.923342
Target:  5'- uAACauGuCcACGAAAAGUCAGACACGu -3'
miRNA:   3'- -UUGggCuGaUGCUUUUCAGUCUGUGC- -5'
11651 3' -49.3 NC_003102.1 + 137204 0.72 0.923342
Target:  5'- uAACauGuCcACGAAAAGUCAGACACGu -3'
miRNA:   3'- -UUGggCuGaUGCUUUUCAGUCUGUGC- -5'
11651 3' -49.3 NC_003102.1 + 67152 0.71 0.934364
Target:  5'- uACaaGAgUaguuaACGAAAAGUCAGACACGu -3'
miRNA:   3'- uUGggCUgA-----UGCUUUUCAGUCUGUGC- -5'
11651 3' -49.3 NC_003102.1 + 89602 0.71 0.948914
Target:  5'- ----aGuuUACGAAAAGUCGGACACGu -3'
miRNA:   3'- uugggCugAUGCUUUUCAGUCUGUGC- -5'
11651 3' -49.3 NC_003102.1 + 61347 0.7 0.953243
Target:  5'- ----aGACUuaaaGAAAAGUCAGACACGu -3'
miRNA:   3'- uugggCUGAug--CUUUUCAGUCUGUGC- -5'
11651 3' -49.3 NC_003102.1 + 104485 0.7 0.953243
Target:  5'- cAACCC----ACGAAAAGUCuGACACGu -3'
miRNA:   3'- -UUGGGcugaUGCUUUUCAGuCUGUGC- -5'
11651 3' -49.3 NC_003102.1 + 130829 0.7 0.957319
Target:  5'- cGCuuGACUACGAAAauGGUUAcGGCGCc -3'
miRNA:   3'- uUGggCUGAUGCUUU--UCAGU-CUGUGc -5'
11651 3' -49.3 NC_003102.1 + 26361 0.69 0.971182
Target:  5'- aAACauGuuaACGAAAAGUCAGACACGu -3'
miRNA:   3'- -UUGggCugaUGCUUUUCAGUCUGUGC- -5'
11651 3' -49.3 NC_003102.1 + 132029 0.68 0.983546
Target:  5'- uACCCa---ACGAAAAGUCAGACAa- -3'
miRNA:   3'- uUGGGcugaUGCUUUUCAGUCUGUgc -5'
11651 3' -49.3 NC_003102.1 + 89479 0.68 0.988725
Target:  5'- ----aGAC-ACGAAAAGUCAGACAgGu -3'
miRNA:   3'- uugggCUGaUGCUUUUCAGUCUGUgC- -5'
11651 3' -49.3 NC_003102.1 + 113115 0.67 0.991402
Target:  5'- cGACCCGACguggugUACaaGAGAGUCAGAaacguCGCGg -3'
miRNA:   3'- -UUGGGCUG------AUGc-UUUUCAGUCU-----GUGC- -5'
11651 3' -49.3 NC_003102.1 + 103441 0.67 0.991402
Target:  5'- ---aUGGCgcaauaacguCGAAAAGUCAGACACGu -3'
miRNA:   3'- uuggGCUGau--------GCUUUUCAGUCUGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.