miRNA display CGI


Results 21 - 40 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11651 3' -49.3 NC_003102.1 + 61347 0.7 0.953243
Target:  5'- ----aGACUuaaaGAAAAGUCAGACACGu -3'
miRNA:   3'- uugggCUGAug--CUUUUCAGUCUGUGC- -5'
11651 3' -49.3 NC_003102.1 + 61651 0.66 0.996558
Target:  5'- aGGCCCaaacGAUgauCGAGuaauugaaacAAGUCAGACGCGu -3'
miRNA:   3'- -UUGGG----CUGau-GCUU----------UUCAGUCUGUGC- -5'
11651 3' -49.3 NC_003102.1 + 61755 0.66 0.997557
Target:  5'- -gUCaGACUACGAAaacguucaGAGaUCGGACACGu -3'
miRNA:   3'- uuGGgCUGAUGCUU--------UUC-AGUCUGUGC- -5'
11651 3' -49.3 NC_003102.1 + 67152 0.71 0.934364
Target:  5'- uACaaGAgUaguuaACGAAAAGUCAGACACGu -3'
miRNA:   3'- uUGggCUgA-----UGCUUUUCAGUCUGUGC- -5'
11651 3' -49.3 NC_003102.1 + 67442 0.72 0.917432
Target:  5'- --gCCGACUuuaaacauguuuGCaAAAAGUCAGACACGu -3'
miRNA:   3'- uugGGCUGA------------UGcUUUUCAGUCUGUGC- -5'
11651 3' -49.3 NC_003102.1 + 89401 0.67 0.992537
Target:  5'- uACuuGuuUaaaacAUGAAAAGUCAGACACGu -3'
miRNA:   3'- uUGggCugA-----UGCUUUUCAGUCUGUGC- -5'
11651 3' -49.3 NC_003102.1 + 89427 0.74 0.852701
Target:  5'- aAACauGuCUAUGAAAAGUCAGACAUGu -3'
miRNA:   3'- -UUGggCuGAUGCUUUUCAGUCUGUGC- -5'
11651 3' -49.3 NC_003102.1 + 89479 0.68 0.988725
Target:  5'- ----aGAC-ACGAAAAGUCAGACAgGu -3'
miRNA:   3'- uugggCUGaUGCUUUUCAGUCUGUgC- -5'
11651 3' -49.3 NC_003102.1 + 89602 0.71 0.948914
Target:  5'- ----aGuuUACGAAAAGUCGGACACGu -3'
miRNA:   3'- uugggCugAUGCUUUUCAGUCUGUGC- -5'
11651 3' -49.3 NC_003102.1 + 89676 0.73 0.868802
Target:  5'- cACCaGAuuCUACGAAAAGUCAGcCACGu -3'
miRNA:   3'- uUGGgCU--GAUGCUUUUCAGUCuGUGC- -5'
11651 3' -49.3 NC_003102.1 + 96406 0.66 0.996323
Target:  5'- uACCCGAUcaaagugugcaugGCGAuuccAAAGUgAGACGCGu -3'
miRNA:   3'- uUGGGCUGa------------UGCU----UUUCAgUCUGUGC- -5'
11651 3' -49.3 NC_003102.1 + 97874 0.81 0.466381
Target:  5'- aAACCUGuCUAUGAAAAGUCAGACAa- -3'
miRNA:   3'- -UUGGGCuGAUGCUUUUCAGUCUGUgc -5'
11651 3' -49.3 NC_003102.1 + 97931 0.86 0.280615
Target:  5'- aAACCCGuCUAUGAAAAGUCAGACAa- -3'
miRNA:   3'- -UUGGGCuGAUGCUUUUCAGUCUGUgc -5'
11651 3' -49.3 NC_003102.1 + 97988 0.86 0.280615
Target:  5'- aAACCCGuCUAUGAAAAGUCAGACAa- -3'
miRNA:   3'- -UUGGGCuGAUGCUUUUCAGUCUGUgc -5'
11651 3' -49.3 NC_003102.1 + 103441 0.67 0.991402
Target:  5'- ---aUGGCgcaauaacguCGAAAAGUCAGACACGu -3'
miRNA:   3'- uuggGCUGau--------GCUUUUCAGUCUGUGC- -5'
11651 3' -49.3 NC_003102.1 + 103506 0.77 0.708691
Target:  5'- ---aCGugUccGCGAAAAGUCAGACACGu -3'
miRNA:   3'- uuggGCugA--UGCUUUUCAGUCUGUGC- -5'
11651 3' -49.3 NC_003102.1 + 103556 0.8 0.548076
Target:  5'- uGACCauCGACauguccGCGAAAAGUCAGACACGu -3'
miRNA:   3'- -UUGG--GCUGa-----UGCUUUUCAGUCUGUGC- -5'
11651 3' -49.3 NC_003102.1 + 103615 0.77 0.698114
Target:  5'- uGACCauCGACauguucACGAAAAGUCGGACGCGu -3'
miRNA:   3'- -UUGG--GCUGa-----UGCUUUUCAGUCUGUGC- -5'
11651 3' -49.3 NC_003102.1 + 104308 0.79 0.612146
Target:  5'- aAGCCauCGACacguccACGAAAAGUCAGACACGu -3'
miRNA:   3'- -UUGG--GCUGa-----UGCUUUUCAGUCUGUGC- -5'
11651 3' -49.3 NC_003102.1 + 104485 0.7 0.953243
Target:  5'- cAACCC----ACGAAAAGUCuGACACGu -3'
miRNA:   3'- -UUGGGcugaUGCUUUUCAGuCUGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.