miRNA display CGI


Results 21 - 40 of 56 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11651 3' -49.3 NC_003102.1 + 26142 0.98 0.053515
Target:  5'- aAACCCGACUACGAAAAGUCAGACAa- -3'
miRNA:   3'- -UUGGGCUGAUGCUUUUCAGUCUGUgc -5'
11651 3' -49.3 NC_003102.1 + 137402 0.74 0.852701
Target:  5'- ---aCGGCUAUGAAAAGUCGGcCGCGu -3'
miRNA:   3'- uuggGCUGAUGCUUUUCAGUCuGUGC- -5'
11651 3' -49.3 NC_003102.1 + 26083 0.76 0.770255
Target:  5'- aAACgCGuCUACaAAAAGUCAGACACGu -3'
miRNA:   3'- -UUGgGCuGAUGcUUUUCAGUCUGUGC- -5'
11651 3' -49.3 NC_003102.1 + 97931 0.86 0.280615
Target:  5'- aAACCCGuCUAUGAAAAGUCAGACAa- -3'
miRNA:   3'- -UUGGGCuGAUGCUUUUCAGUCUGUgc -5'
11651 3' -49.3 NC_003102.1 + 121848 1.02 0.030122
Target:  5'- aAACCUGACUACGAAAAGUCAGACACGu -3'
miRNA:   3'- -UUGGGCUGAUGCUUUUCAGUCUGUGC- -5'
11651 3' -49.3 NC_003102.1 + 26304 0.76 0.750167
Target:  5'- --aUCGACauguuaACGAAAAGUCAGACACGu -3'
miRNA:   3'- uugGGCUGa-----UGCUUUUCAGUCUGUGC- -5'
11651 3' -49.3 NC_003102.1 + 10608 0.84 0.348774
Target:  5'- aAACCCGA-UACGAAAAGUCAGACAa- -3'
miRNA:   3'- -UUGGGCUgAUGCUUUUCAGUCUGUgc -5'
11651 3' -49.3 NC_003102.1 + 97988 0.86 0.280615
Target:  5'- aAACCCGuCUAUGAAAAGUCAGACAa- -3'
miRNA:   3'- -UUGGGCuGAUGCUUUUCAGUCUGUgc -5'
11651 3' -49.3 NC_003102.1 + 137326 0.74 0.852701
Target:  5'- ---aCGGCUAUGAAAAGUCGGcCGCGu -3'
miRNA:   3'- uuggGCUGAUGCUUUUCAGUCuGUGC- -5'
11651 3' -49.3 NC_003102.1 + 97874 0.81 0.466381
Target:  5'- aAACCUGuCUAUGAAAAGUCAGACAa- -3'
miRNA:   3'- -UUGGGCuGAUGCUUUUCAGUCUGUgc -5'
11651 3' -49.3 NC_003102.1 + 10686 0.86 0.280615
Target:  5'- aAGCCaUGuCUACGAAAAGUCAGACACGu -3'
miRNA:   3'- -UUGG-GCuGAUGCUUUUCAGUCUGUGC- -5'
11651 3' -49.3 NC_003102.1 + 26003 0.78 0.644517
Target:  5'- uAACCUGuuUACGAAAAGUCGGcCACGu -3'
miRNA:   3'- -UUGGGCugAUGCUUUUCAGUCuGUGC- -5'
11651 3' -49.3 NC_003102.1 + 26751 0.85 0.317097
Target:  5'- aAACUCGACacguccACGAAAAGUCAGACACGu -3'
miRNA:   3'- -UUGGGCUGa-----UGCUUUUCAGUCUGUGC- -5'
11651 3' -49.3 NC_003102.1 + 112619 0.79 0.601378
Target:  5'- -uCCaCGACUAUaAAAAGUCAGACACGu -3'
miRNA:   3'- uuGG-GCUGAUGcUUUUCAGUCUGUGC- -5'
11651 3' -49.3 NC_003102.1 + 31976 0.66 0.997514
Target:  5'- cGAUCUggaaGACUGCGAcgAGAGUCuaguguacguuuuGGACGCGa -3'
miRNA:   3'- -UUGGG----CUGAUGCU--UUUCAG-------------UCUGUGC- -5'
11651 3' -49.3 NC_003102.1 + 61347 0.7 0.953243
Target:  5'- ----aGACUuaaaGAAAAGUCAGACACGu -3'
miRNA:   3'- uugggCUGAug--CUUUUCAGUCUGUGC- -5'
11651 3' -49.3 NC_003102.1 + 56050 0.76 0.729616
Target:  5'- aAACauGuuUACGAAAAGUCAGACACGu -3'
miRNA:   3'- -UUGggCugAUGCUUUUCAGUCUGUGC- -5'
11651 3' -49.3 NC_003102.1 + 89479 0.68 0.988725
Target:  5'- ----aGAC-ACGAAAAGUCAGACAgGu -3'
miRNA:   3'- uugggCUGaUGCUUUUCAGUCUGUgC- -5'
11651 3' -49.3 NC_003102.1 + 132029 0.68 0.983546
Target:  5'- uACCCa---ACGAAAAGUCAGACAa- -3'
miRNA:   3'- uUGGGcugaUGCUUUUCAGUCUGUgc -5'
11651 3' -49.3 NC_003102.1 + 104485 0.7 0.953243
Target:  5'- cAACCC----ACGAAAAGUCuGACACGu -3'
miRNA:   3'- -UUGGGcugaUGCUUUUCAGuCUGUGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.