miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11651 3' -49.3 NC_003102.1 + 137402 0.74 0.852701
Target:  5'- ---aCGGCUAUGAAAAGUCGGcCGCGu -3'
miRNA:   3'- uuggGCUGAUGCUUUUCAGUCuGUGC- -5'
11651 3' -49.3 NC_003102.1 + 137326 0.74 0.852701
Target:  5'- ---aCGGCUAUGAAAAGUCGGcCGCGu -3'
miRNA:   3'- uuggGCUGAUGCUUUUCAGUCuGUGC- -5'
11651 3' -49.3 NC_003102.1 + 137281 0.72 0.923342
Target:  5'- uAACauGuCcACGAAAAGUCAGACACGu -3'
miRNA:   3'- -UUGggCuGaUGCUUUUCAGUCUGUGC- -5'
11651 3' -49.3 NC_003102.1 + 137204 0.72 0.923342
Target:  5'- uAACauGuCcACGAAAAGUCAGACACGu -3'
miRNA:   3'- -UUGggCuGaUGCUUUUCAGUCUGUGC- -5'
11651 3' -49.3 NC_003102.1 + 137127 0.73 0.891166
Target:  5'- aGACauGuCcACGAAAAGUCAGACACGu -3'
miRNA:   3'- -UUGggCuGaUGCUUUUCAGUCUGUGC- -5'
11651 3' -49.3 NC_003102.1 + 132029 0.68 0.983546
Target:  5'- uACCCa---ACGAAAAGUCAGACAa- -3'
miRNA:   3'- uUGGGcugaUGCUUUUCAGUCUGUgc -5'
11651 3' -49.3 NC_003102.1 + 130829 0.7 0.957319
Target:  5'- cGCuuGACUACGAAAauGGUUAcGGCGCc -3'
miRNA:   3'- uUGggCUGAUGCUUU--UCAGU-CUGUGc -5'
11651 3' -49.3 NC_003102.1 + 121928 0.67 0.995245
Target:  5'- aAACgCGuuUAUGAAAAGUCAaACACGu -3'
miRNA:   3'- -UUGgGCugAUGCUUUUCAGUcUGUGC- -5'
11651 3' -49.3 NC_003102.1 + 121848 1.02 0.030122
Target:  5'- aAACCUGACUACGAAAAGUCAGACACGu -3'
miRNA:   3'- -UUGGGCUGAUGCUUUUCAGUCUGUGC- -5'
11651 3' -49.3 NC_003102.1 + 121806 0.66 0.996558
Target:  5'- --gCCGACUuuuCGAuAAGUCAucGACAUGu -3'
miRNA:   3'- uugGGCUGAu--GCUuUUCAGU--CUGUGC- -5'
11651 3' -49.3 NC_003102.1 + 120464 0.66 0.997093
Target:  5'- aAACCCGGCUcgaucguuCGggGGGUgUAcGACACGc -3'
miRNA:   3'- -UUGGGCUGAu-------GCuuUUCA-GU-CUGUGC- -5'
11651 3' -49.3 NC_003102.1 + 118973 0.66 0.997958
Target:  5'- aAACUCGGCUGCGGuccGAGUCcuuuGCAUGu -3'
miRNA:   3'- -UUGGGCUGAUGCUu--UUCAGuc--UGUGC- -5'
11651 3' -49.3 NC_003102.1 + 114739 0.67 0.99355
Target:  5'- aAACUCGACUA-GAAcauAGUCuGGACACa -3'
miRNA:   3'- -UUGGGCUGAUgCUUu--UCAG-UCUGUGc -5'
11651 3' -49.3 NC_003102.1 + 113115 0.67 0.991402
Target:  5'- cGACCCGACguggugUACaaGAGAGUCAGAaacguCGCGg -3'
miRNA:   3'- -UUGGGCUG------AUGc-UUUUCAGUCU-----GUGC- -5'
11651 3' -49.3 NC_003102.1 + 112619 0.79 0.601378
Target:  5'- -uCCaCGACUAUaAAAAGUCAGACACGu -3'
miRNA:   3'- uuGG-GCUGAUGcUUUUCAGUCUGUGC- -5'
11651 3' -49.3 NC_003102.1 + 112532 0.79 0.579925
Target:  5'- gAGCUCG-CguccACGAAAAGUCAGACACGu -3'
miRNA:   3'- -UUGGGCuGa---UGCUUUUCAGUCUGUGC- -5'
11651 3' -49.3 NC_003102.1 + 104485 0.7 0.953243
Target:  5'- cAACCC----ACGAAAAGUCuGACACGu -3'
miRNA:   3'- -UUGGGcugaUGCUUUUCAGuCUGUGC- -5'
11651 3' -49.3 NC_003102.1 + 104308 0.79 0.612146
Target:  5'- aAGCCauCGACacguccACGAAAAGUCAGACACGu -3'
miRNA:   3'- -UUGG--GCUGa-----UGCUUUUCAGUCUGUGC- -5'
11651 3' -49.3 NC_003102.1 + 103615 0.77 0.698114
Target:  5'- uGACCauCGACauguucACGAAAAGUCGGACGCGu -3'
miRNA:   3'- -UUGG--GCUGa-----UGCUUUUCAGUCUGUGC- -5'
11651 3' -49.3 NC_003102.1 + 103556 0.8 0.548076
Target:  5'- uGACCauCGACauguccGCGAAAAGUCAGACACGu -3'
miRNA:   3'- -UUGG--GCUGa-----UGCUUUUCAGUCUGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.