Results 1 - 20 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11651 | 5' | -52.1 | NC_003102.1 | + | 133275 | 0.66 | 0.96251 |
Target: 5'- cAACCUGGCCGGCUUUUagauuacGCUu--- -3' miRNA: 3'- -UUGGACCGGCUGAAAAgca----CGAcuua -5' |
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11651 | 5' | -52.1 | NC_003102.1 | + | 121893 | 0.79 | 0.384213 |
Target: 5'- gAACCUGGCCGACUUUUCGUaCUu--- -3' miRNA: 3'- -UUGGACCGGCUGAAAAGCAcGAcuua -5' |
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11651 | 5' | -52.1 | NC_003102.1 | + | 26048 | 0.82 | 0.242089 |
Target: 5'- aAACCUGGCCGACUUUUCGUGa----- -3' miRNA: 3'- -UUGGACCGGCUGAAAAGCACgacuua -5' |
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11651 | 5' | -52.1 | NC_003102.1 | + | 10732 | 1.03 | 0.011149 |
Target: 5'- gAACCUGGCCGACUUUUCGUGCUGAAUc -3' miRNA: 3'- -UUGGACCGGCUGAAAAGCACGACUUA- -5' |
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11651 | 5' | -52.1 | NC_003102.1 | + | 61601 | 0.69 | 0.860233 |
Target: 5'- gAACCUGGCaGACUUUUCGUaaauuuuauuauaCUGAAUg -3' miRNA: 3'- -UUGGACCGgCUGAAAAGCAc------------GACUUA- -5' |
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11651 | 5' | -52.1 | NC_003102.1 | + | 97896 | 0.7 | 0.855335 |
Target: 5'- gAACgUGGCCGACUUUUCGUacaaaccuGUcuaUGAAa -3' miRNA: 3'- -UUGgACCGGCUGAAAAGCA--------CG---ACUUa -5' |
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11651 | 5' | -52.1 | NC_003102.1 | + | 98010 | 0.7 | 0.855335 |
Target: 5'- gAACgUGGCCGACUUUUCGUacaaacccGUcuaUGAAa -3' miRNA: 3'- -UUGgACCGGCUGAAAAGCA--------CG---ACUUa -5' |
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11651 | 5' | -52.1 | NC_003102.1 | + | 67113 | 0.71 | 0.792663 |
Target: 5'- gAACCUGGCCGACUUUUCa-------- -3' miRNA: 3'- -UUGGACCGGCUGAAAAGcacgacuua -5' |
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11651 | 5' | -52.1 | NC_003102.1 | + | 23415 | 0.75 | 0.593232 |
Target: 5'- cGGCCUGGCCGACUguuacgGUGCcGAAUu -3' miRNA: 3'- -UUGGACCGGCUGAaaag--CACGaCUUA- -5' |
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11651 | 5' | -52.1 | NC_003102.1 | + | 67398 | 0.78 | 0.420404 |
Target: 5'- gAACCUGGCCGACUUUUCGUa------ -3' miRNA: 3'- -UUGGACCGGCUGAAAAGCAcgacuua -5' |
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11651 | 5' | -52.1 | NC_003102.1 | + | 121813 | 0.75 | 0.582482 |
Target: 5'- gAACCUGGCCGACUUUUCGa------- -3' miRNA: 3'- -UUGGACCGGCUGAAAAGCacgacuua -5' |
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11651 | 5' | -52.1 | NC_003102.1 | + | 97839 | 0.74 | 0.62564 |
Target: 5'- gAACgUGGCCGACUUUUCGUGa----- -3' miRNA: 3'- -UUGgACCGGCUGAAAAGCACgacuua -5' |
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11651 | 5' | -52.1 | NC_003102.1 | + | 36230 | 0.67 | 0.936211 |
Target: 5'- gAACgUGGCCGACUUUUCaUGUa---- -3' miRNA: 3'- -UUGgACCGGCUGAAAAGcACGacuua -5' |
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11651 | 5' | -52.1 | NC_003102.1 | + | 67308 | 0.77 | 0.478349 |
Target: 5'- gAACCUGGCCGACUUUUCGauaaGCg---- -3' miRNA: 3'- -UUGGACCGGCUGAAAAGCa---CGacuua -5' |
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11651 | 5' | -52.1 | NC_003102.1 | + | 89640 | 0.67 | 0.936211 |
Target: 5'- aAACCUGuCUGACUUUUCGUGUc---- -3' miRNA: 3'- -UUGGACcGGCUGAAAAGCACGacuua -5' |
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11651 | 5' | -52.1 | NC_003102.1 | + | 89482 | 0.74 | 0.62564 |
Target: 5'- aAACCcGGCCGACUUUUCGUGg----- -3' miRNA: 3'- -UUGGaCCGGCUGAAAAGCACgacuua -5' |
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11651 | 5' | -52.1 | NC_003102.1 | + | 67210 | 0.77 | 0.44886 |
Target: 5'- gAACCUGGCCGACUUUUCGauauucauaacgUGUUGu-- -3' miRNA: 3'- -UUGGACCGGCUGAAAAGC------------ACGACuua -5' |
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11651 | 5' | -52.1 | NC_003102.1 | + | 42895 | 0.79 | 0.366908 |
Target: 5'- gAACCUGGCCGACUUUUUGUGaauaUGu-- -3' miRNA: 3'- -UUGGACCGGCUGAAAAGCACg---ACuua -5' |
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11651 | 5' | -52.1 | NC_003102.1 | + | 54594 | 0.69 | 0.878978 |
Target: 5'- gAACCUGGCCGACUUUUUu--UUGAc- -3' miRNA: 3'- -UUGGACCGGCUGAAAAGcacGACUua -5' |
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11651 | 5' | -52.1 | NC_003102.1 | + | 97953 | 0.7 | 0.855335 |
Target: 5'- gAACgUGGCCGACUUUUCGUacaaacccGUcuaUGAAa -3' miRNA: 3'- -UUGgACCGGCUGAAAAGCA--------CG---ACUUa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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