Results 21 - 27 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11653 | 3' | -55.8 | NC_003102.1 | + | 110391 | 0.66 | 0.894471 |
Target: 5'- aUCGCacacgaugaucUCGGGCGCguccacgauCAUGUCGACgGCGUg -3' miRNA: 3'- -AGCGc----------AGCUCGCG---------GUACAGUUG-CGCG- -5' |
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11653 | 3' | -55.8 | NC_003102.1 | + | 63220 | 0.66 | 0.900951 |
Target: 5'- aUCGUGUCucGCGUCGaccGUUuGCGUGCg -3' miRNA: 3'- -AGCGCAGcuCGCGGUa--CAGuUGCGCG- -5' |
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11653 | 3' | -55.8 | NC_003102.1 | + | 72150 | 0.66 | 0.913212 |
Target: 5'- aUCGCGUCc-GCGaUCAUGUacugaAGCGCGa -3' miRNA: 3'- -AGCGCAGcuCGC-GGUACAg----UUGCGCg -5' |
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11653 | 3' | -55.8 | NC_003102.1 | + | 114496 | 0.66 | 0.918989 |
Target: 5'- aCGC-UUGAGCGUCGaucGUCuuugauCGCGCa -3' miRNA: 3'- aGCGcAGCUCGCGGUa--CAGuu----GCGCG- -5' |
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11653 | 3' | -55.8 | NC_003102.1 | + | 27880 | 0.66 | 0.918989 |
Target: 5'- aUCGCaac---CGUCAUGUUGACGCGCa -3' miRNA: 3'- -AGCGcagcucGCGGUACAGUUGCGCG- -5' |
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11653 | 3' | -55.8 | NC_003102.1 | + | 28951 | 0.66 | 0.918989 |
Target: 5'- aUCGUGUCucuuugcGCGCuCAaGUCAcguagaaugcgGCGCGCg -3' miRNA: 3'- -AGCGCAGcu-----CGCG-GUaCAGU-----------UGCGCG- -5' |
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11653 | 3' | -55.8 | NC_003102.1 | + | 19440 | 0.66 | 0.918989 |
Target: 5'- aUCuCGUCGAGUcuguaGUCuUGUCGAUGCGa -3' miRNA: 3'- -AGcGCAGCUCG-----CGGuACAGUUGCGCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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