miRNA display CGI


Results 21 - 27 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11653 3' -55.8 NC_003102.1 + 121128 0.67 0.887761
Target:  5'- uUCGUGcCGGucGCGCCGUGUCcgcCGgGUu -3'
miRNA:   3'- -AGCGCaGCU--CGCGGUACAGuu-GCgCG- -5'
11653 3' -55.8 NC_003102.1 + 110391 0.66 0.894471
Target:  5'- aUCGCacacgaugaucUCGGGCGCguccacgauCAUGUCGACgGCGUg -3'
miRNA:   3'- -AGCGc----------AGCUCGCG---------GUACAGUUG-CGCG- -5'
11653 3' -55.8 NC_003102.1 + 63220 0.66 0.900951
Target:  5'- aUCGUGUCucGCGUCGaccGUUuGCGUGCg -3'
miRNA:   3'- -AGCGCAGcuCGCGGUa--CAGuUGCGCG- -5'
11653 3' -55.8 NC_003102.1 + 114496 0.66 0.918989
Target:  5'- aCGC-UUGAGCGUCGaucGUCuuugauCGCGCa -3'
miRNA:   3'- aGCGcAGCUCGCGGUa--CAGuu----GCGCG- -5'
11653 3' -55.8 NC_003102.1 + 27880 0.66 0.918989
Target:  5'- aUCGCaac---CGUCAUGUUGACGCGCa -3'
miRNA:   3'- -AGCGcagcucGCGGUACAGUUGCGCG- -5'
11653 3' -55.8 NC_003102.1 + 19440 0.66 0.918989
Target:  5'- aUCuCGUCGAGUcuguaGUCuUGUCGAUGCGa -3'
miRNA:   3'- -AGcGCAGCUCG-----CGGuACAGUUGCGCg -5'
11653 3' -55.8 NC_003102.1 + 20124 0.99 0.013433
Target:  5'- cUCGCGUCGAGCGCCAUGUacACGCGCg -3'
miRNA:   3'- -AGCGCAGCUCGCGGUACAguUGCGCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.