Results 1 - 20 of 65 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
11653 | 5' | -49.6 | NC_003102.1 | + | 95062 | 0.66 | 0.99804 |
Target: 5'- aCAUGCGgcgccUACGCCcuuguugauguguucGGcCGACACGAUCu -3' miRNA: 3'- aGUGCGC-----AUGUGG---------------CUuGCUGUGUUAG- -5' |
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11653 | 5' | -49.6 | NC_003102.1 | + | 110583 | 0.66 | 0.997931 |
Target: 5'- gUAUGCGUuugagucggcGCACCGAAaacuuguccgaagaaGACAgGAUCg -3' miRNA: 3'- aGUGCGCA----------UGUGGCUUg--------------CUGUgUUAG- -5' |
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11653 | 5' | -49.6 | NC_003102.1 | + | 135352 | 0.66 | 0.997893 |
Target: 5'- -aAUGCGUACACUuuGAAUGcCACGAc- -3' miRNA: 3'- agUGCGCAUGUGG--CUUGCuGUGUUag -5' |
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11653 | 5' | -49.6 | NC_003102.1 | + | 95770 | 0.66 | 0.997893 |
Target: 5'- gCACGCGccACugUGGGCGAU--GAUCa -3' miRNA: 3'- aGUGCGCa-UGugGCUUGCUGugUUAG- -5' |
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11653 | 5' | -49.6 | NC_003102.1 | + | 41401 | 0.66 | 0.997893 |
Target: 5'- aUCGCGCaucaGCGCCGAauACGuuuCGCcGUCa -3' miRNA: 3'- -AGUGCGca--UGUGGCU--UGCu--GUGuUAG- -5' |
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11653 | 5' | -49.6 | NC_003102.1 | + | 47030 | 0.66 | 0.997893 |
Target: 5'- uUCAC-CGUGC-CCGAuacaGACGCGuccGUCg -3' miRNA: 3'- -AGUGcGCAUGuGGCUug--CUGUGU---UAG- -5' |
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11653 | 5' | -49.6 | NC_003102.1 | + | 107242 | 0.66 | 0.997855 |
Target: 5'- aUACGUGaucggACAuuuaaucUCGAGCGGCACGAUUu -3' miRNA: 3'- aGUGCGCa----UGU-------GGCUUGCUGUGUUAG- -5' |
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11653 | 5' | -49.6 | NC_003102.1 | + | 77297 | 0.66 | 0.997443 |
Target: 5'- aUCACGUgcccaGUAUGCagacagacgacgaCGAGCGuCACAAUCg -3' miRNA: 3'- -AGUGCG-----CAUGUG-------------GCUUGCuGUGUUAG- -5' |
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11653 | 5' | -49.6 | NC_003102.1 | + | 131646 | 0.66 | 0.997017 |
Target: 5'- -gGCGUGUGCGacuguggcgauCCGGACGAgACcagAGUCg -3' miRNA: 3'- agUGCGCAUGU-----------GGCUUGCUgUG---UUAG- -5' |
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11653 | 5' | -49.6 | NC_003102.1 | + | 63067 | 0.66 | 0.997017 |
Target: 5'- -gACGCGagACACgaucuCGGcgGCGGCACGGUCc -3' miRNA: 3'- agUGCGCa-UGUG-----GCU--UGCUGUGUUAG- -5' |
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11653 | 5' | -49.6 | NC_003102.1 | + | 100550 | 0.66 | 0.996966 |
Target: 5'- gCGCGCGUcaauaucgaagcGCACucuagacggcuaaCGGACGACGCGuccggAUCg -3' miRNA: 3'- aGUGCGCA------------UGUG-------------GCUUGCUGUGU-----UAG- -5' |
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11653 | 5' | -49.6 | NC_003102.1 | + | 25079 | 0.66 | 0.996476 |
Target: 5'- -aACGCaGUACAUgGAacACGACAUAAa- -3' miRNA: 3'- agUGCG-CAUGUGgCU--UGCUGUGUUag -5' |
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11653 | 5' | -49.6 | NC_003102.1 | + | 52667 | 0.66 | 0.996476 |
Target: 5'- aCACGCGUACAUgcacaCGcACGcACACAc-- -3' miRNA: 3'- aGUGCGCAUGUG-----GCuUGC-UGUGUuag -5' |
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11653 | 5' | -49.6 | NC_003102.1 | + | 18040 | 0.66 | 0.996476 |
Target: 5'- gUCGgGCGUGCuaUGAACGGgACGAUUc -3' miRNA: 3'- -AGUgCGCAUGugGCUUGCUgUGUUAG- -5' |
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11653 | 5' | -49.6 | NC_003102.1 | + | 139098 | 0.66 | 0.996476 |
Target: 5'- aUCACGUacGCACCGAG-GGCAUuAUCu -3' miRNA: 3'- -AGUGCGcaUGUGGCUUgCUGUGuUAG- -5' |
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11653 | 5' | -49.6 | NC_003102.1 | + | 19960 | 0.66 | 0.996476 |
Target: 5'- -gGCGUGUACAUggCGcuCGACGCGAg- -3' miRNA: 3'- agUGCGCAUGUG--GCuuGCUGUGUUag -5' |
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11653 | 5' | -49.6 | NC_003102.1 | + | 90319 | 0.66 | 0.995857 |
Target: 5'- -gACGCG-GCGCCGAACaAgACGAUg -3' miRNA: 3'- agUGCGCaUGUGGCUUGcUgUGUUAg -5' |
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11653 | 5' | -49.6 | NC_003102.1 | + | 85708 | 0.66 | 0.995857 |
Target: 5'- -aGCGCGUACACaaacgCGAuuaGACACAc-- -3' miRNA: 3'- agUGCGCAUGUG-----GCUug-CUGUGUuag -5' |
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11653 | 5' | -49.6 | NC_003102.1 | + | 110197 | 0.66 | 0.995857 |
Target: 5'- aCA-GCGgacACGCCGu-CGACAUGAUCg -3' miRNA: 3'- aGUgCGCa--UGUGGCuuGCUGUGUUAG- -5' |
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11653 | 5' | -49.6 | NC_003102.1 | + | 5803 | 0.66 | 0.995857 |
Target: 5'- gCcCGCGUGauuCCGGucACGuACGCAGUCg -3' miRNA: 3'- aGuGCGCAUgu-GGCU--UGC-UGUGUUAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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