miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11653 5' -49.6 NC_003102.1 + 95062 0.66 0.99804
Target:  5'- aCAUGCGgcgccUACGCCcuuguugauguguucGGcCGACACGAUCu -3'
miRNA:   3'- aGUGCGC-----AUGUGG---------------CUuGCUGUGUUAG- -5'
11653 5' -49.6 NC_003102.1 + 110583 0.66 0.997931
Target:  5'- gUAUGCGUuugagucggcGCACCGAAaacuuguccgaagaaGACAgGAUCg -3'
miRNA:   3'- aGUGCGCA----------UGUGGCUUg--------------CUGUgUUAG- -5'
11653 5' -49.6 NC_003102.1 + 135352 0.66 0.997893
Target:  5'- -aAUGCGUACACUuuGAAUGcCACGAc- -3'
miRNA:   3'- agUGCGCAUGUGG--CUUGCuGUGUUag -5'
11653 5' -49.6 NC_003102.1 + 95770 0.66 0.997893
Target:  5'- gCACGCGccACugUGGGCGAU--GAUCa -3'
miRNA:   3'- aGUGCGCa-UGugGCUUGCUGugUUAG- -5'
11653 5' -49.6 NC_003102.1 + 41401 0.66 0.997893
Target:  5'- aUCGCGCaucaGCGCCGAauACGuuuCGCcGUCa -3'
miRNA:   3'- -AGUGCGca--UGUGGCU--UGCu--GUGuUAG- -5'
11653 5' -49.6 NC_003102.1 + 47030 0.66 0.997893
Target:  5'- uUCAC-CGUGC-CCGAuacaGACGCGuccGUCg -3'
miRNA:   3'- -AGUGcGCAUGuGGCUug--CUGUGU---UAG- -5'
11653 5' -49.6 NC_003102.1 + 107242 0.66 0.997855
Target:  5'- aUACGUGaucggACAuuuaaucUCGAGCGGCACGAUUu -3'
miRNA:   3'- aGUGCGCa----UGU-------GGCUUGCUGUGUUAG- -5'
11653 5' -49.6 NC_003102.1 + 77297 0.66 0.997443
Target:  5'- aUCACGUgcccaGUAUGCagacagacgacgaCGAGCGuCACAAUCg -3'
miRNA:   3'- -AGUGCG-----CAUGUG-------------GCUUGCuGUGUUAG- -5'
11653 5' -49.6 NC_003102.1 + 131646 0.66 0.997017
Target:  5'- -gGCGUGUGCGacuguggcgauCCGGACGAgACcagAGUCg -3'
miRNA:   3'- agUGCGCAUGU-----------GGCUUGCUgUG---UUAG- -5'
11653 5' -49.6 NC_003102.1 + 63067 0.66 0.997017
Target:  5'- -gACGCGagACACgaucuCGGcgGCGGCACGGUCc -3'
miRNA:   3'- agUGCGCa-UGUG-----GCU--UGCUGUGUUAG- -5'
11653 5' -49.6 NC_003102.1 + 100550 0.66 0.996966
Target:  5'- gCGCGCGUcaauaucgaagcGCACucuagacggcuaaCGGACGACGCGuccggAUCg -3'
miRNA:   3'- aGUGCGCA------------UGUG-------------GCUUGCUGUGU-----UAG- -5'
11653 5' -49.6 NC_003102.1 + 25079 0.66 0.996476
Target:  5'- -aACGCaGUACAUgGAacACGACAUAAa- -3'
miRNA:   3'- agUGCG-CAUGUGgCU--UGCUGUGUUag -5'
11653 5' -49.6 NC_003102.1 + 52667 0.66 0.996476
Target:  5'- aCACGCGUACAUgcacaCGcACGcACACAc-- -3'
miRNA:   3'- aGUGCGCAUGUG-----GCuUGC-UGUGUuag -5'
11653 5' -49.6 NC_003102.1 + 18040 0.66 0.996476
Target:  5'- gUCGgGCGUGCuaUGAACGGgACGAUUc -3'
miRNA:   3'- -AGUgCGCAUGugGCUUGCUgUGUUAG- -5'
11653 5' -49.6 NC_003102.1 + 139098 0.66 0.996476
Target:  5'- aUCACGUacGCACCGAG-GGCAUuAUCu -3'
miRNA:   3'- -AGUGCGcaUGUGGCUUgCUGUGuUAG- -5'
11653 5' -49.6 NC_003102.1 + 19960 0.66 0.996476
Target:  5'- -gGCGUGUACAUggCGcuCGACGCGAg- -3'
miRNA:   3'- agUGCGCAUGUG--GCuuGCUGUGUUag -5'
11653 5' -49.6 NC_003102.1 + 90319 0.66 0.995857
Target:  5'- -gACGCG-GCGCCGAACaAgACGAUg -3'
miRNA:   3'- agUGCGCaUGUGGCUUGcUgUGUUAg -5'
11653 5' -49.6 NC_003102.1 + 85708 0.66 0.995857
Target:  5'- -aGCGCGUACACaaacgCGAuuaGACACAc-- -3'
miRNA:   3'- agUGCGCAUGUG-----GCUug-CUGUGUuag -5'
11653 5' -49.6 NC_003102.1 + 110197 0.66 0.995857
Target:  5'- aCA-GCGgacACGCCGu-CGACAUGAUCg -3'
miRNA:   3'- aGUgCGCa--UGUGGCuuGCUGUGUUAG- -5'
11653 5' -49.6 NC_003102.1 + 5803 0.66 0.995857
Target:  5'- gCcCGCGUGauuCCGGucACGuACGCAGUCg -3'
miRNA:   3'- aGuGCGCAUgu-GGCU--UGC-UGUGUUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.