Results 41 - 60 of 65 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11653 | 5' | -49.6 | NC_003102.1 | + | 123598 | 0.71 | 0.939914 |
Target: 5'- gCGCGCGcACACCGcGAUGAauuaCACAGUUg -3' miRNA: 3'- aGUGCGCaUGUGGC-UUGCU----GUGUUAG- -5' |
|||||||
11653 | 5' | -49.6 | NC_003102.1 | + | 73937 | 0.72 | 0.912111 |
Target: 5'- aUCACGCGUG-ACCGuucacGACGACACcGUg -3' miRNA: 3'- -AGUGCGCAUgUGGC-----UUGCUGUGuUAg -5' |
|||||||
11653 | 5' | -49.6 | NC_003102.1 | + | 63010 | 0.68 | 0.987072 |
Target: 5'- gUCGCGCGUggccaaaacgACgGCCGAAUaGGCGCGuUCg -3' miRNA: 3'- -AGUGCGCA----------UG-UGGCUUG-CUGUGUuAG- -5' |
|||||||
11653 | 5' | -49.6 | NC_003102.1 | + | 33246 | 0.68 | 0.988627 |
Target: 5'- -aAUGCGUGCACgauGAUGACACAAa- -3' miRNA: 3'- agUGCGCAUGUGgc-UUGCUGUGUUag -5' |
|||||||
11653 | 5' | -49.6 | NC_003102.1 | + | 117237 | 0.68 | 0.988627 |
Target: 5'- aCACGCGcGCGCCGcgggcuuUGACGCAc-- -3' miRNA: 3'- aGUGCGCaUGUGGCuu-----GCUGUGUuag -5' |
|||||||
11653 | 5' | -49.6 | NC_003102.1 | + | 25079 | 0.66 | 0.996476 |
Target: 5'- -aACGCaGUACAUgGAacACGACAUAAa- -3' miRNA: 3'- agUGCG-CAUGUGgCU--UGCUGUGUUag -5' |
|||||||
11653 | 5' | -49.6 | NC_003102.1 | + | 52667 | 0.66 | 0.996476 |
Target: 5'- aCACGCGUACAUgcacaCGcACGcACACAc-- -3' miRNA: 3'- aGUGCGCAUGUG-----GCuUGC-UGUGUuag -5' |
|||||||
11653 | 5' | -49.6 | NC_003102.1 | + | 100550 | 0.66 | 0.996966 |
Target: 5'- gCGCGCGUcaauaucgaagcGCACucuagacggcuaaCGGACGACGCGuccggAUCg -3' miRNA: 3'- aGUGCGCA------------UGUG-------------GCUUGCUGUGU-----UAG- -5' |
|||||||
11653 | 5' | -49.6 | NC_003102.1 | + | 131646 | 0.66 | 0.997017 |
Target: 5'- -gGCGUGUGCGacuguggcgauCCGGACGAgACcagAGUCg -3' miRNA: 3'- agUGCGCAUGU-----------GGCUUGCUgUG---UUAG- -5' |
|||||||
11653 | 5' | -49.6 | NC_003102.1 | + | 18040 | 0.66 | 0.996476 |
Target: 5'- gUCGgGCGUGCuaUGAACGGgACGAUUc -3' miRNA: 3'- -AGUgCGCAUGugGCUUGCUgUGUUAG- -5' |
|||||||
11653 | 5' | -49.6 | NC_003102.1 | + | 107242 | 0.66 | 0.997855 |
Target: 5'- aUACGUGaucggACAuuuaaucUCGAGCGGCACGAUUu -3' miRNA: 3'- aGUGCGCa----UGU-------GGCUUGCUGUGUUAG- -5' |
|||||||
11653 | 5' | -49.6 | NC_003102.1 | + | 47030 | 0.66 | 0.997893 |
Target: 5'- uUCAC-CGUGC-CCGAuacaGACGCGuccGUCg -3' miRNA: 3'- -AGUGcGCAUGuGGCUug--CUGUGU---UAG- -5' |
|||||||
11653 | 5' | -49.6 | NC_003102.1 | + | 41401 | 0.66 | 0.997893 |
Target: 5'- aUCGCGCaucaGCGCCGAauACGuuuCGCcGUCa -3' miRNA: 3'- -AGUGCGca--UGUGGCU--UGCu--GUGuUAG- -5' |
|||||||
11653 | 5' | -49.6 | NC_003102.1 | + | 95062 | 0.66 | 0.99804 |
Target: 5'- aCAUGCGgcgccUACGCCcuuguugauguguucGGcCGACACGAUCu -3' miRNA: 3'- aGUGCGC-----AUGUGG---------------CUuGCUGUGUUAG- -5' |
|||||||
11653 | 5' | -49.6 | NC_003102.1 | + | 5803 | 0.66 | 0.995857 |
Target: 5'- gCcCGCGUGauuCCGGucACGuACGCAGUCg -3' miRNA: 3'- aGuGCGCAUgu-GGCU--UGC-UGUGUUAG- -5' |
|||||||
11653 | 5' | -49.6 | NC_003102.1 | + | 110197 | 0.66 | 0.995857 |
Target: 5'- aCA-GCGgacACGCCGu-CGACAUGAUCg -3' miRNA: 3'- aGUgCGCa--UGUGGCuuGCUGUGUUAG- -5' |
|||||||
11653 | 5' | -49.6 | NC_003102.1 | + | 636 | 0.67 | 0.995152 |
Target: 5'- gUACGUGgGCACCGAcuCGGCugAAg- -3' miRNA: 3'- aGUGCGCaUGUGGCUu-GCUGugUUag -5' |
|||||||
11653 | 5' | -49.6 | NC_003102.1 | + | 42056 | 0.67 | 0.992436 |
Target: 5'- cCGCGCu--CACCGAacagccgucgGCGucGCACAAUCu -3' miRNA: 3'- aGUGCGcauGUGGCU----------UGC--UGUGUUAG- -5' |
|||||||
11653 | 5' | -49.6 | NC_003102.1 | + | 30871 | 0.67 | 0.992436 |
Target: 5'- -gACGCGUuCGCCGAGCuAgGCAAg- -3' miRNA: 3'- agUGCGCAuGUGGCUUGcUgUGUUag -5' |
|||||||
11653 | 5' | -49.6 | NC_003102.1 | + | 65523 | 0.68 | 0.990034 |
Target: 5'- -aACGUGUAC-UUGAacaaaaaucGCGACGCGGUCa -3' miRNA: 3'- agUGCGCAUGuGGCU---------UGCUGUGUUAG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home