miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11654 3' -48.7 NC_003102.1 + 42428 0.66 0.998683
Target:  5'- aGACUgcgGUagcgUACGAAAAGUUGGUgACu -3'
miRNA:   3'- -UUGGa--CAa---AUGCUUUUCAGCCGgUGc -5'
11654 3' -48.7 NC_003102.1 + 29698 0.66 0.997686
Target:  5'- cGCCgcuuUGUaUACGcAAaaaccAAGUCGGCCGCa -3'
miRNA:   3'- uUGG----ACAaAUGC-UU-----UUCAGCCGGUGc -5'
11654 3' -48.7 NC_003102.1 + 52206 0.66 0.997238
Target:  5'- cAGCUUGUguucagGCGA--AG-CGGCCACa -3'
miRNA:   3'- -UUGGACAaa----UGCUuuUCaGCCGGUGc -5'
11654 3' -48.7 NC_003102.1 + 121785 0.67 0.996125
Target:  5'- ----cGUUUuaguaauCGAAacAAGUCGGCCACGu -3'
miRNA:   3'- uuggaCAAAu------GCUU--UUCAGCCGGUGC- -5'
11654 3' -48.7 NC_003102.1 + 31891 0.67 0.995443
Target:  5'- aAACUcGUUUACGAucGGUCGcGCC-CGc -3'
miRNA:   3'- -UUGGaCAAAUGCUuuUCAGC-CGGuGC- -5'
11654 3' -48.7 NC_003102.1 + 10686 0.67 0.993787
Target:  5'- aAGCCaUGUcUACGAAAAGUCaGaCACGu -3'
miRNA:   3'- -UUGG-ACAaAUGCUUUUCAGcCgGUGC- -5'
11654 3' -48.7 NC_003102.1 + 36176 0.68 0.99168
Target:  5'- aAACaUGUUUGCuAAAAGUCGGaCACGu -3'
miRNA:   3'- -UUGgACAAAUGcUUUUCAGCCgGUGC- -5'
11654 3' -48.7 NC_003102.1 + 54629 0.68 0.99168
Target:  5'- aAACaUGUUUGCuAAAAGUCGGaCACGu -3'
miRNA:   3'- -UUGgACAAAUGcUUUUCAGCCgGUGC- -5'
11654 3' -48.7 NC_003102.1 + 103820 0.68 0.990432
Target:  5'- cAAUCU----AUGAAGAGUCGGCCAgGu -3'
miRNA:   3'- -UUGGAcaaaUGCUUUUCAGCCGGUgC- -5'
11654 3' -48.7 NC_003102.1 + 10574 0.68 0.989042
Target:  5'- --------cACGAAAAGUCGGCCAgGu -3'
miRNA:   3'- uuggacaaaUGCUUUUCAGCCGGUgC- -5'
11654 3' -48.7 NC_003102.1 + 76637 0.68 0.989042
Target:  5'- --------aACGAAAAGUCGGCCAgGu -3'
miRNA:   3'- uuggacaaaUGCUUUUCAGCCGGUgC- -5'
11654 3' -48.7 NC_003102.1 + 121649 0.68 0.9875
Target:  5'- uGACUUau---CGAAAAGUCGGCCAgGu -3'
miRNA:   3'- -UUGGAcaaauGCUUUUCAGCCGGUgC- -5'
11654 3' -48.7 NC_003102.1 + 32741 0.68 0.9875
Target:  5'- aAGCaUGUUUAUGAAAAG--GGCCGCGc -3'
miRNA:   3'- -UUGgACAAAUGCUUUUCagCCGGUGC- -5'
11654 3' -48.7 NC_003102.1 + 56170 0.69 0.985796
Target:  5'- uACaUGUUUAUGAuuuauuuugaAAAGUCGGCCAgGu -3'
miRNA:   3'- uUGgACAAAUGCU----------UUUCAGCCGGUgC- -5'
11654 3' -48.7 NC_003102.1 + 67140 0.69 0.98186
Target:  5'- cGAUCgcuuauCGAAAAGUCGGCCAgGu -3'
miRNA:   3'- -UUGGacaaauGCUUUUCAGCCGGUgC- -5'
11654 3' -48.7 NC_003102.1 + 56050 0.69 0.98186
Target:  5'- aAACaUGUUUACGAAAAGUCaGaCACGu -3'
miRNA:   3'- -UUGgACAAAUGCUUUUCAGcCgGUGC- -5'
11654 3' -48.7 NC_003102.1 + 25870 0.69 0.979609
Target:  5'- uGACUUuUUUaaguauugaucACGAAAAGUCGGCCAgGu -3'
miRNA:   3'- -UUGGAcAAA-----------UGCUUUUCAGCCGGUgC- -5'
11654 3' -48.7 NC_003102.1 + 35491 0.7 0.977157
Target:  5'- cGACCUGguagcCGAauccGAAGaCGGCCGCGu -3'
miRNA:   3'- -UUGGACaaau-GCU----UUUCaGCCGGUGC- -5'
11654 3' -48.7 NC_003102.1 + 89676 0.7 0.971614
Target:  5'- cACCaGauucUACGAAAAGUCaGCCACGu -3'
miRNA:   3'- uUGGaCaa--AUGCUUUUCAGcCGGUGC- -5'
11654 3' -48.7 NC_003102.1 + 121848 0.7 0.971614
Target:  5'- aAACCUGacUACGAAAAGUCaGaCACGu -3'
miRNA:   3'- -UUGGACaaAUGCUUUUCAGcCgGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.