miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11654 3' -48.7 NC_003102.1 + 137401 0.76 0.788762
Target:  5'- ----cGgcUAUGAAAAGUCGGCCGCGu -3'
miRNA:   3'- uuggaCaaAUGCUUUUCAGCCGGUGC- -5'
11654 3' -48.7 NC_003102.1 + 137325 0.76 0.788762
Target:  5'- ----cGgcUAUGAAAAGUCGGCCGCGu -3'
miRNA:   3'- uuggaCaaAUGCUUUUCAGCCGGUGC- -5'
11654 3' -48.7 NC_003102.1 + 137024 0.77 0.706797
Target:  5'- uAACaUGUacACGAAAAGUUGGCCACGu -3'
miRNA:   3'- -UUGgACAaaUGCUUUUCAGCCGGUGC- -5'
11654 3' -48.7 NC_003102.1 + 132240 0.75 0.817165
Target:  5'- uAACaaGUUUAUGAacauguuuuuaaAAAGUCGGCCGCGu -3'
miRNA:   3'- -UUGgaCAAAUGCU------------UUUCAGCCGGUGC- -5'
11654 3' -48.7 NC_003102.1 + 121848 0.7 0.971614
Target:  5'- aAACCUGacUACGAAAAGUCaGaCACGu -3'
miRNA:   3'- -UUGGACaaAUGCUUUUCAGcCgGUGC- -5'
11654 3' -48.7 NC_003102.1 + 121785 0.67 0.996125
Target:  5'- ----cGUUUuaguaauCGAAacAAGUCGGCCACGu -3'
miRNA:   3'- uuggaCAAAu------GCUU--UUCAGCCGGUGC- -5'
11654 3' -48.7 NC_003102.1 + 121727 0.71 0.94471
Target:  5'- ----gGUUuaagUACGAAAAGUCGGCCAgGu -3'
miRNA:   3'- uuggaCAA----AUGCUUUUCAGCCGGUgC- -5'
11654 3' -48.7 NC_003102.1 + 121649 0.68 0.9875
Target:  5'- uGACUUau---CGAAAAGUCGGCCAgGu -3'
miRNA:   3'- -UUGGAcaaauGCUUUUCAGCCGGUgC- -5'
11654 3' -48.7 NC_003102.1 + 112938 0.77 0.727939
Target:  5'- aGACUacaaaGUUUACGAAAAGUUGGCCAgGu -3'
miRNA:   3'- -UUGGa----CAAAUGCUUUUCAGCCGGUgC- -5'
11654 3' -48.7 NC_003102.1 + 112736 0.75 0.826266
Target:  5'- uAACaUGUcaACGAAAAGUCGGCCAgGu -3'
miRNA:   3'- -UUGgACAaaUGCUUUUCAGCCGGUgC- -5'
11654 3' -48.7 NC_003102.1 + 110682 0.72 0.923604
Target:  5'- uGACUUGg-UACGuGAuGUCGGCCACGu -3'
miRNA:   3'- -UUGGACaaAUGCuUUuCAGCCGGUGC- -5'
11654 3' -48.7 NC_003102.1 + 104683 0.75 0.817165
Target:  5'- aAACaUGUcaACGAAAAGUCGGCCAgGu -3'
miRNA:   3'- -UUGgACAaaUGCUUUUCAGCCGGUgC- -5'
11654 3' -48.7 NC_003102.1 + 104606 0.85 0.344664
Target:  5'- ----aGUUUAUGAAAAGUCGGCCACGu -3'
miRNA:   3'- uuggaCAAAUGCUUUUCAGCCGGUGC- -5'
11654 3' -48.7 NC_003102.1 + 103820 0.68 0.990432
Target:  5'- cAAUCU----AUGAAGAGUCGGCCAgGu -3'
miRNA:   3'- -UUGGAcaaaUGCUUUUCAGCCGGUgC- -5'
11654 3' -48.7 NC_003102.1 + 103646 0.71 0.949316
Target:  5'- ----cGUUUgagcACGAAAAGUCGGCCAgGu -3'
miRNA:   3'- uuggaCAAA----UGCUUUUCAGCCGGUgC- -5'
11654 3' -48.7 NC_003102.1 + 103622 0.72 0.929286
Target:  5'- cGACaUGUUcACGAAAAGUCGGaCGCGu -3'
miRNA:   3'- -UUGgACAAaUGCUUUUCAGCCgGUGC- -5'
11654 3' -48.7 NC_003102.1 + 97840 0.85 0.344664
Target:  5'- aGACggGUUugUACGAAAAGUCGGCCACGu -3'
miRNA:   3'- -UUGgaCAA--AUGCUUUUCAGCCGGUGC- -5'
11654 3' -48.7 NC_003102.1 + 97784 0.71 0.94471
Target:  5'- aGACggGUUugUACGAAAAGU-GGCCACGu -3'
miRNA:   3'- -UUGgaCAA--AUGCUUUUCAgCCGGUGC- -5'
11654 3' -48.7 NC_003102.1 + 97727 0.83 0.433463
Target:  5'- aGACagGUUugUACGAAAAGUCGGCCACGu -3'
miRNA:   3'- -UUGgaCAA--AUGCUUUUCAGCCGGUGC- -5'
11654 3' -48.7 NC_003102.1 + 97677 0.81 0.534195
Target:  5'- ----cGUUcACGAAAAGUCGGCCACGu -3'
miRNA:   3'- uuggaCAAaUGCUUUUCAGCCGGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.