Results 1 - 20 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11654 | 3' | -48.7 | NC_003102.1 | + | 42428 | 0.66 | 0.998683 |
Target: 5'- aGACUgcgGUagcgUACGAAAAGUUGGUgACu -3' miRNA: 3'- -UUGGa--CAa---AUGCUUUUCAGCCGgUGc -5' |
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11654 | 3' | -48.7 | NC_003102.1 | + | 26528 | 0.75 | 0.835167 |
Target: 5'- cAUCUuucu-CGAAAAGUCGGCCACGu -3' miRNA: 3'- uUGGAcaaauGCUUUUCAGCCGGUGC- -5' |
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11654 | 3' | -48.7 | NC_003102.1 | + | 89602 | 0.75 | 0.826266 |
Target: 5'- ----aGUUUACGAAAAGUCGGaCACGu -3' miRNA: 3'- uuggaCAAAUGCUUUUCAGCCgGUGC- -5' |
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11654 | 3' | -48.7 | NC_003102.1 | + | 26003 | 1.07 | 0.017633 |
Target: 5'- uAACCUGUUUACGAAAAGUCGGCCACGu -3' miRNA: 3'- -UUGGACAAAUGCUUUUCAGCCGGUGC- -5' |
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11654 | 3' | -48.7 | NC_003102.1 | + | 54629 | 0.68 | 0.99168 |
Target: 5'- aAACaUGUUUGCuAAAAGUCGGaCACGu -3' miRNA: 3'- -UUGgACAAAUGcUUUUCAGCCgGUGC- -5' |
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11654 | 3' | -48.7 | NC_003102.1 | + | 103820 | 0.68 | 0.990432 |
Target: 5'- cAAUCU----AUGAAGAGUCGGCCAgGu -3' miRNA: 3'- -UUGGAcaaaUGCUUUUCAGCCGGUgC- -5' |
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11654 | 3' | -48.7 | NC_003102.1 | + | 32741 | 0.68 | 0.9875 |
Target: 5'- aAGCaUGUUUAUGAAAAG--GGCCGCGc -3' miRNA: 3'- -UUGgACAAAUGCUUUUCagCCGGUGC- -5' |
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11654 | 3' | -48.7 | NC_003102.1 | + | 56170 | 0.69 | 0.985796 |
Target: 5'- uACaUGUUUAUGAuuuauuuugaAAAGUCGGCCAgGu -3' miRNA: 3'- uUGgACAAAUGCU----------UUUCAGCCGGUgC- -5' |
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11654 | 3' | -48.7 | NC_003102.1 | + | 121848 | 0.7 | 0.971614 |
Target: 5'- aAACCUGacUACGAAAAGUCaGaCACGu -3' miRNA: 3'- -UUGGACaaAUGCUUUUCAGcCgGUGC- -5' |
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11654 | 3' | -48.7 | NC_003102.1 | + | 76513 | 0.74 | 0.852333 |
Target: 5'- -----aUUUACGAAAAGUCGGCCAgGu -3' miRNA: 3'- uuggacAAAUGCUUUUCAGCCGGUgC- -5' |
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11654 | 3' | -48.7 | NC_003102.1 | + | 62753 | 0.72 | 0.934696 |
Target: 5'- aAACCUGcaagccUACGAAcAGUUGGUCGCGc -3' miRNA: 3'- -UUGGACaa----AUGCUUuUCAGCCGGUGC- -5' |
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11654 | 3' | -48.7 | NC_003102.1 | + | 89676 | 0.7 | 0.971614 |
Target: 5'- cACCaGauucUACGAAAAGUCaGCCACGu -3' miRNA: 3'- uUGGaCaa--AUGCUUUUCAGcCGGUGC- -5' |
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11654 | 3' | -48.7 | NC_003102.1 | + | 29698 | 0.66 | 0.997686 |
Target: 5'- cGCCgcuuUGUaUACGcAAaaaccAAGUCGGCCGCa -3' miRNA: 3'- uUGG----ACAaAUGC-UU-----UUCAGCCGGUGc -5' |
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11654 | 3' | -48.7 | NC_003102.1 | + | 61548 | 0.72 | 0.923604 |
Target: 5'- uGAUauaUGUUUACaAAAAGUCGGCCAgGu -3' miRNA: 3'- -UUGg--ACAAAUGcUUUUCAGCCGGUgC- -5' |
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11654 | 3' | -48.7 | NC_003102.1 | + | 31891 | 0.67 | 0.995443 |
Target: 5'- aAACUcGUUUACGAucGGUCGcGCC-CGc -3' miRNA: 3'- -UUGGaCAAAUGCUuuUCAGC-CGGuGC- -5' |
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11654 | 3' | -48.7 | NC_003102.1 | + | 35491 | 0.7 | 0.977157 |
Target: 5'- cGACCUGguagcCGAauccGAAGaCGGCCGCGu -3' miRNA: 3'- -UUGGACaaau-GCU----UUUCaGCCGGUGC- -5' |
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11654 | 3' | -48.7 | NC_003102.1 | + | 110682 | 0.72 | 0.923604 |
Target: 5'- uGACUUGg-UACGuGAuGUCGGCCACGu -3' miRNA: 3'- -UUGGACaaAUGCuUUuCAGCCGGUGC- -5' |
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11654 | 3' | -48.7 | NC_003102.1 | + | 112736 | 0.75 | 0.826266 |
Target: 5'- uAACaUGUcaACGAAAAGUCGGCCAgGu -3' miRNA: 3'- -UUGgACAaaUGCUUUUCAGCCGGUgC- -5' |
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11654 | 3' | -48.7 | NC_003102.1 | + | 10686 | 0.67 | 0.993787 |
Target: 5'- aAGCCaUGUcUACGAAAAGUCaGaCACGu -3' miRNA: 3'- -UUGG-ACAaAUGCUUUUCAGcCgGUGC- -5' |
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11654 | 3' | -48.7 | NC_003102.1 | + | 76637 | 0.68 | 0.989042 |
Target: 5'- --------aACGAAAAGUCGGCCAgGu -3' miRNA: 3'- uuggacaaaUGCUUUUCAGCCGGUgC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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