miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11654 5' -50.1 NC_003102.1 + 137192 0.66 0.99058
Target:  5'- gAACgUGGCCaACUUUUCGUGuacauGUUAAa -3'
miRNA:   3'- -UUGgACCGGcUGAAAAGCAC-----UAGUUa -5'
11654 5' -50.1 NC_003102.1 + 130 0.67 0.979811
Target:  5'- cGCgaGGCCGACgag-CGUGAgcUCGAUc -3'
miRNA:   3'- uUGgaCCGGCUGaaaaGCACU--AGUUA- -5'
11654 5' -50.1 NC_003102.1 + 42728 0.67 0.979811
Target:  5'- cAACUUGuCUGACUUUUCGUGAaCAu- -3'
miRNA:   3'- -UUGGACcGGCUGAAAAGCACUaGUua -5'
11654 5' -50.1 NC_003102.1 + 54789 0.68 0.974708
Target:  5'- gAACCUGGCUGACUUUUUa-GAUUu-- -3'
miRNA:   3'- -UUGGACCGGCUGAAAAGcaCUAGuua -5'
11654 5' -50.1 NC_003102.1 + 54314 0.68 0.965382
Target:  5'- cAACUUGGCCGACUUUUcaaaguauaaaCGUG-UUAAa -3'
miRNA:   3'- -UUGGACCGGCUGAAAA-----------GCACuAGUUa -5'
11654 5' -50.1 NC_003102.1 + 61601 0.69 0.953871
Target:  5'- gAACCUGGCaGACUUUUCGUa------ -3'
miRNA:   3'- -UUGGACCGgCUGAAAAGCAcuaguua -5'
11654 5' -50.1 NC_003102.1 + 89508 0.69 0.940019
Target:  5'- gAACgUGGCUGACUUUUCGUaGAa---- -3'
miRNA:   3'- -UUGgACCGGCUGAAAAGCA-CUaguua -5'
11654 5' -50.1 NC_003102.1 + 112472 0.69 0.940019
Target:  5'- gAACCUGGCUGACUUUUCa-------- -3'
miRNA:   3'- -UUGGACCGGCUGAAAAGcacuaguua -5'
11654 5' -50.1 NC_003102.1 + 104287 0.7 0.929438
Target:  5'- uAACCUGGuuGACUUUUCGauaagccAUCGAc -3'
miRNA:   3'- -UUGGACCggCUGAAAAGCac-----UAGUUa -5'
11654 5' -50.1 NC_003102.1 + 96498 0.7 0.923738
Target:  5'- uAACCUGGCCGACaaucUGaUGAUCGGc -3'
miRNA:   3'- -UUGGACCGGCUGaaaaGC-ACUAGUUa -5'
11654 5' -50.1 NC_003102.1 + 42596 0.7 0.911519
Target:  5'- gAACCUGGCCGACcgcaaacUUGUGAuauuuUCAAa -3'
miRNA:   3'- -UUGGACCGGCUGaaa----AGCACU-----AGUUa -5'
11654 5' -50.1 NC_003102.1 + 54594 0.71 0.89822
Target:  5'- gAACCUGGCCGACUUUUUuuUGAc---- -3'
miRNA:   3'- -UUGGACCGGCUGAAAAGc-ACUaguua -5'
11654 5' -50.1 NC_003102.1 + 26326 0.71 0.89822
Target:  5'- gAAUUUGGCCGACUUUUUGgucAUCGAc -3'
miRNA:   3'- -UUGGACCGGCUGAAAAGCac-UAGUUa -5'
11654 5' -50.1 NC_003102.1 + 26362 0.72 0.843628
Target:  5'- gAACgUGGCCGACUUUUCGaGAaaGAUg -3'
miRNA:   3'- -UUGgACCGGCUGAAAAGCaCUagUUA- -5'
11654 5' -50.1 NC_003102.1 + 97896 0.72 0.834891
Target:  5'- gAACgUGGCCGACUUUUCGUa--CAAa -3'
miRNA:   3'- -UUGgACCGGCUGAAAAGCAcuaGUUa -5'
11654 5' -50.1 NC_003102.1 + 97953 0.72 0.834891
Target:  5'- gAACgUGGCCGACUUUUCGUa--CAAa -3'
miRNA:   3'- -UUGgACCGGCUGAAAAGCAcuaGUUa -5'
11654 5' -50.1 NC_003102.1 + 98010 0.72 0.834891
Target:  5'- gAACgUGGCCGACUUUUCGUa--CAAa -3'
miRNA:   3'- -UUGgACCGGCUGAAAAGCAcuaGUUa -5'
11654 5' -50.1 NC_003102.1 + 103657 0.72 0.834891
Target:  5'- gAACCUGGCCGACUcUUCauaGAUUGAa -3'
miRNA:   3'- -UUGGACCGGCUGAaAAGca-CUAGUUa -5'
11654 5' -50.1 NC_003102.1 + 133275 0.73 0.816794
Target:  5'- cAACCUGGCCGGCUUUUa--GAUUAc- -3'
miRNA:   3'- -UUGGACCGGCUGAAAAgcaCUAGUua -5'
11654 5' -50.1 NC_003102.1 + 112653 0.73 0.816794
Target:  5'- gAACCUGuCUGACUUUUCGUGAaCAu- -3'
miRNA:   3'- -UUGGACcGGCUGAAAAGCACUaGUua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.