miRNA display CGI


Results 1 - 20 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11655 5' -43.9 NC_003102.1 + 114375 0.66 0.999999
Target:  5'- aCUACAAGAuaucGGUUagAGACGCGaUCgAGAUg -3'
miRNA:   3'- -GAUGUUUU----UCAG--UCUGUGCaAG-UCUA- -5'
11655 5' -43.9 NC_003102.1 + 61538 0.66 0.999999
Target:  5'- uUACAAAAAGUCGGcCAgGUUU-GAUu -3'
miRNA:   3'- gAUGUUUUUCAGUCuGUgCAAGuCUA- -5'
11655 5' -43.9 NC_003102.1 + 42570 0.66 0.999998
Target:  5'- -cACGAAAAGUCAGACAaGUUg---- -3'
miRNA:   3'- gaUGUUUUUCAGUCUGUgCAAgucua -5'
11655 5' -43.9 NC_003102.1 + 104260 0.66 0.999998
Target:  5'- aUGCAAAAAGUCAGACAgcUUU-GAUu -3'
miRNA:   3'- gAUGUUUUUCAGUCUGUgcAAGuCUA- -5'
11655 5' -43.9 NC_003102.1 + 112631 0.66 0.999998
Target:  5'- uUAUGAAAAGUCAGcCAgGUUCGa-- -3'
miRNA:   3'- gAUGUUUUUCAGUCuGUgCAAGUcua -5'
11655 5' -43.9 NC_003102.1 + 132034 0.66 0.999998
Target:  5'- -aACGAAAAGUCAGACAaGUUa---- -3'
miRNA:   3'- gaUGUUUUUCAGUCUGUgCAAgucua -5'
11655 5' -43.9 NC_003102.1 + 61764 0.67 0.999995
Target:  5'- uUugAuucGGUCAGACuacgaaaACGUUCAGAg -3'
miRNA:   3'- gAugUuuuUCAGUCUG-------UGCAAGUCUa -5'
11655 5' -43.9 NC_003102.1 + 104674 0.67 0.999989
Target:  5'- -aACGAAAAGUCGGcCAgGUUCGa-- -3'
miRNA:   3'- gaUGUUUUUCAGUCuGUgCAAGUcua -5'
11655 5' -43.9 NC_003102.1 + 103638 0.67 0.999989
Target:  5'- -cACGAAAAGUCGGcCAgGUUCGa-- -3'
miRNA:   3'- gaUGUUUUUCAGUCuGUgCAAGUcua -5'
11655 5' -43.9 NC_003102.1 + 112727 0.67 0.999989
Target:  5'- -aACGAAAAGUCGGcCAgGUUCGa-- -3'
miRNA:   3'- gaUGUUUUUCAGUCuGUgCAAGUcua -5'
11655 5' -43.9 NC_003102.1 + 76637 0.67 0.999989
Target:  5'- -aACGAAAAGUCGGcCAgGUUCGa-- -3'
miRNA:   3'- gaUGUUUUUCAGUCuGUgCAAGUcua -5'
11655 5' -43.9 NC_003102.1 + 26108 0.67 0.999989
Target:  5'- -cACGAAAAGUCGGcCAgGUUCGa-- -3'
miRNA:   3'- gaUGUUUUUCAGUCuGUgCAAGUcua -5'
11655 5' -43.9 NC_003102.1 + 26031 0.67 0.999989
Target:  5'- -cACGAAAAGUCGGcCAgGUUCGa-- -3'
miRNA:   3'- gaUGUUUUUCAGUCuGUgCAAGUcua -5'
11655 5' -43.9 NC_003102.1 + 25810 0.67 0.999989
Target:  5'- -cACGAAAAGUCGGcCAgGUUCGa-- -3'
miRNA:   3'- gaUGUUUUUCAGUCuGUgCAAGUcua -5'
11655 5' -43.9 NC_003102.1 + 10574 0.67 0.999989
Target:  5'- -cACGAAAAGUCGGcCAgGUUCGa-- -3'
miRNA:   3'- gaUGUUUUUCAGUCuGUgCAAGUcua -5'
11655 5' -43.9 NC_003102.1 + 10415 0.67 0.999989
Target:  5'- -cACGAAAAGUCGGcCAgGUUCGa-- -3'
miRNA:   3'- gaUGUUUUUCAGUCuGUgCAAGUcua -5'
11655 5' -43.9 NC_003102.1 + 103817 0.67 0.999985
Target:  5'- uCUAUGAAGAGUCGGcCAgGUUCGa-- -3'
miRNA:   3'- -GAUGUUUUUCAGUCuGUgCAAGUcua -5'
11655 5' -43.9 NC_003102.1 + 55947 0.67 0.999985
Target:  5'- -aGCGAAAcGUCAGACAaGUUCAa-- -3'
miRNA:   3'- gaUGUUUUuCAGUCUGUgCAAGUcua -5'
11655 5' -43.9 NC_003102.1 + 137219 0.67 0.999985
Target:  5'- uUAUGAAAAGUCcGACAgGUUCAa-- -3'
miRNA:   3'- gAUGUUUUUCAGuCUGUgCAAGUcua -5'
11655 5' -43.9 NC_003102.1 + 42737 0.68 0.99997
Target:  5'- -cACAAAAAGUCGGcCAgGUUCGa-- -3'
miRNA:   3'- gaUGUUUUUCAGUCuGUgCAAGUcua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.