miRNA display CGI


Results 41 - 60 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11655 5' -43.9 NC_003102.1 + 121920 0.72 0.996967
Target:  5'- uUAUGAAAAGUCAaACACGUUCAa-- -3'
miRNA:   3'- gAUGUUUUUCAGUcUGUGCAAGUcua -5'
11655 5' -43.9 NC_003102.1 + 36068 0.72 0.996967
Target:  5'- gUACAugAAAAGUCGGcCACGUUCAa-- -3'
miRNA:   3'- gAUGU--UUUUCAGUCuGUGCAAGUcua -5'
11655 5' -43.9 NC_003102.1 + 103455 0.74 0.991926
Target:  5'- --uCGAAAAGUCAGACACGUUa---- -3'
miRNA:   3'- gauGUUUUUCAGUCUGUGCAAgucua -5'
11655 5' -43.9 NC_003102.1 + 42427 0.74 0.990654
Target:  5'- uUAUAAAAAGUCGGACAaGUUCAa-- -3'
miRNA:   3'- gAUGUUUUUCAGUCUGUgCAAGUcua -5'
11655 5' -43.9 NC_003102.1 + 104609 0.74 0.987641
Target:  5'- uUAUGAAAAGUCGGcCACGUUCAa-- -3'
miRNA:   3'- gAUGUUUUUCAGUCuGUGCAAGUcua -5'
11655 5' -43.9 NC_003102.1 + 76452 0.74 0.987641
Target:  5'- uUAUGAAAAGUCGGcCACGUUCAa-- -3'
miRNA:   3'- gAUGUUUUUCAGUCuGUGCAAGUcua -5'
11655 5' -43.9 NC_003102.1 + 61629 0.75 0.983927
Target:  5'- aUugAAAcAAGUCAGACGCGUUCGa-- -3'
miRNA:   3'- gAugUUU-UUCAGUCUGUGCAAGUcua -5'
11655 5' -43.9 NC_003102.1 + 137399 0.75 0.983927
Target:  5'- gCUAUGAAAAGUCGGcCGCGUUCGa-- -3'
miRNA:   3'- -GAUGUUUUUCAGUCuGUGCAAGUcua -5'
11655 5' -43.9 NC_003102.1 + 137323 0.75 0.983927
Target:  5'- gCUAUGAAAAGUCGGcCGCGUUCGa-- -3'
miRNA:   3'- -GAUGUUUUUCAGUCuGUGCAAGUcua -5'
11655 5' -43.9 NC_003102.1 + 97681 0.75 0.976849
Target:  5'- -cACGAAAAGUCGGcCACGUUCGa-- -3'
miRNA:   3'- gaUGUUUUUCAGUCuGUGCAAGUcua -5'
11655 5' -43.9 NC_003102.1 + 89482 0.76 0.971002
Target:  5'- -cACGAAAAGUCAGACAgGUUUAa-- -3'
miRNA:   3'- gaUGUUUUUCAGUCUGUgCAAGUcua -5'
11655 5' -43.9 NC_003102.1 + 97867 0.77 0.951911
Target:  5'- uCUAUGAAAAGUCAGACAaGUUguGAUc -3'
miRNA:   3'- -GAUGUUUUUCAGUCUGUgCAAguCUA- -5'
11655 5' -43.9 NC_003102.1 + 97924 0.77 0.951911
Target:  5'- uCUAUGAAAAGUCAGACAaGUUguGAUc -3'
miRNA:   3'- -GAUGUUUUUCAGUCUGUgCAAguCUA- -5'
11655 5' -43.9 NC_003102.1 + 97981 0.77 0.951911
Target:  5'- uCUAUGAAAAGUCAGACAaGUUguGAUc -3'
miRNA:   3'- -GAUGUUUUUCAGUCUGUgCAAguCUA- -5'
11655 5' -43.9 NC_003102.1 + 112446 0.77 0.94727
Target:  5'- -aACuAAAAGUCGGACACGUUCGa-- -3'
miRNA:   3'- gaUGuUUUUCAGUCUGUGCAAGUcua -5'
11655 5' -43.9 NC_003102.1 + 10601 0.77 0.942342
Target:  5'- aUACGAAAAGUCAGACAag-UUAGAa -3'
miRNA:   3'- gAUGUUUUUCAGUCUGUgcaAGUCUa -5'
11655 5' -43.9 NC_003102.1 + 104490 0.78 0.925813
Target:  5'- -cACGAAAAGUCuGACACGUUCGu-- -3'
miRNA:   3'- gaUGUUUUUCAGuCUGUGCAAGUcua -5'
11655 5' -43.9 NC_003102.1 + 97850 0.78 0.919716
Target:  5'- gUACGAAAAGUCGGcCACGUUCGa-- -3'
miRNA:   3'- gAUGUUUUUCAGUCuGUGCAAGUcua -5'
11655 5' -43.9 NC_003102.1 + 97737 0.78 0.919716
Target:  5'- gUACGAAAAGUCGGcCACGUUCGa-- -3'
miRNA:   3'- gAUGUUUUUCAGUCuGUGCAAGUcua -5'
11655 5' -43.9 NC_003102.1 + 36257 0.79 0.913327
Target:  5'- uUAUAAAAAGUCAGACAgGUUCGa-- -3'
miRNA:   3'- gAUGUUUUUCAGUCUGUgCAAGUcua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.