Results 1 - 20 of 102 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11657 | 3' | -49.1 | NC_003102.1 | + | 104315 | 1.1 | 0.012129 |
Target: 5'- cGACACGUCCACGAAAAGUCAGACACGu -3' miRNA: 3'- -CUGUGCAGGUGCUUUUCAGUCUGUGC- -5' |
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11657 | 3' | -49.1 | NC_003102.1 | + | 26746 | 1.1 | 0.012129 |
Target: 5'- cGACACGUCCACGAAAAGUCAGACACGu -3' miRNA: 3'- -CUGUGCAGGUGCUUUUCAGUCUGUGC- -5' |
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11657 | 3' | -49.1 | NC_003102.1 | + | 137127 | 1.06 | 0.021008 |
Target: 5'- aGACAUGUCCACGAAAAGUCAGACACGu -3' miRNA: 3'- -CUGUGCAGGUGCUUUUCAGUCUGUGC- -5' |
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11657 | 3' | -49.1 | NC_003102.1 | + | 103563 | 1.05 | 0.022905 |
Target: 5'- cGACAUGUCCGCGAAAAGUCAGACACGu -3' miRNA: 3'- -CUGUGCAGGUGCUUUUCAGUCUGUGC- -5' |
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11657 | 3' | -49.1 | NC_003102.1 | + | 137205 | 1.01 | 0.039513 |
Target: 5'- aACAUGUCCACGAAAAGUCAGACACGu -3' miRNA: 3'- cUGUGCAGGUGCUUUUCAGUCUGUGC- -5' |
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11657 | 3' | -49.1 | NC_003102.1 | + | 137282 | 1.01 | 0.039513 |
Target: 5'- aACAUGUCCACGAAAAGUCAGACACGu -3' miRNA: 3'- cUGUGCAGGUGCUUUUCAGUCUGUGC- -5' |
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11657 | 3' | -49.1 | NC_003102.1 | + | 112536 | 1 | 0.045568 |
Target: 5'- -uCGCGUCCACGAAAAGUCAGACACGu -3' miRNA: 3'- cuGUGCAGGUGCUUUUCAGUCUGUGC- -5' |
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11657 | 3' | -49.1 | NC_003102.1 | + | 103622 | 0.98 | 0.064026 |
Target: 5'- cGACAUGUUCACGAAAAGUCGGACGCGu -3' miRNA: 3'- -CUGUGCAGGUGCUUUUCAGUCUGUGC- -5' |
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11657 | 3' | -49.1 | NC_003102.1 | + | 103505 | 0.94 | 0.114878 |
Target: 5'- aACGUGUCCGCGAAAAGUCAGACACGu -3' miRNA: 3'- cUGUGCAGGUGCUUUUCAGUCUGUGC- -5' |
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11657 | 3' | -49.1 | NC_003102.1 | + | 10683 | 0.93 | 0.121338 |
Target: 5'- -cCAUGUCUACGAAAAGUCAGACACGu -3' miRNA: 3'- cuGUGCAGGUGCUUUUCAGUCUGUGC- -5' |
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11657 | 3' | -49.1 | NC_003102.1 | + | 56051 | 0.91 | 0.158969 |
Target: 5'- aACAUGUUUACGAAAAGUCAGACACGu -3' miRNA: 3'- cUGUGCAGGUGCUUUUCAGUCUGUGC- -5' |
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11657 | 3' | -49.1 | NC_003102.1 | + | 26302 | 0.89 | 0.201527 |
Target: 5'- cGACAUGUUaACGAAAAGUCAGACACGu -3' miRNA: 3'- -CUGUGCAGgUGCUUUUCAGUCUGUGC- -5' |
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11657 | 3' | -49.1 | NC_003102.1 | + | 89426 | 0.89 | 0.201527 |
Target: 5'- aACAUGUCUAUGAAAAGUCAGACAUGu -3' miRNA: 3'- cUGUGCAGGUGCUUUUCAGUCUGUGC- -5' |
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11657 | 3' | -49.1 | NC_003102.1 | + | 112819 | 0.88 | 0.235139 |
Target: 5'- cACAUGUUCACGAAAAGUCAGACAgGu -3' miRNA: 3'- cUGUGCAGGUGCUUUUCAGUCUGUgC- -5' |
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11657 | 3' | -49.1 | NC_003102.1 | + | 26082 | 0.87 | 0.253646 |
Target: 5'- aACGCGUCUACaAAAAGUCAGACACGu -3' miRNA: 3'- cUGUGCAGGUGcUUUUCAGUCUGUGC- -5' |
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11657 | 3' | -49.1 | NC_003102.1 | + | 26360 | 0.85 | 0.355943 |
Target: 5'- aACAUGUUaACGAAAAGUCAGACACGu -3' miRNA: 3'- cUGUGCAGgUGCUUUUCAGUCUGUGC- -5' |
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11657 | 3' | -49.1 | NC_003102.1 | + | 10766 | 0.81 | 0.545293 |
Target: 5'- aACcCGaCUACGAAAAGUCAGACACGu -3' miRNA: 3'- cUGuGCaGGUGCUUUUCAGUCUGUGC- -5' |
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11657 | 3' | -49.1 | NC_003102.1 | + | 97675 | 0.81 | 0.524541 |
Target: 5'- --gACGUUCACGAAAAGUCGGcCACGu -3' miRNA: 3'- cugUGCAGGUGCUUUUCAGUCuGUGC- -5' |
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11657 | 3' | -49.1 | NC_003102.1 | + | 112617 | 0.79 | 0.619577 |
Target: 5'- ----aGUCCACGAcuauaaAAAGUCAGACACGu -3' miRNA: 3'- cugugCAGGUGCU------UUUCAGUCUGUGC- -5' |
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11657 | 3' | -49.1 | NC_003102.1 | + | 97987 | 0.79 | 0.651732 |
Target: 5'- aACcCGUCUAUGAAAAGUCAGACAa- -3' miRNA: 3'- cUGuGCAGGUGCUUUUCAGUCUGUgc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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