Results 21 - 40 of 102 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11657 | 3' | -49.1 | NC_003102.1 | + | 31252 | 0.67 | 0.996131 |
Target: 5'- cGGCGuCaUCUACGAGagcgucGAGUUGGACACGa -3' miRNA: 3'- -CUGU-GcAGGUGCUU------UUCAGUCUGUGC- -5' |
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11657 | 3' | -49.1 | NC_003102.1 | + | 26973 | 0.67 | 0.997228 |
Target: 5'- aACAUGUUCAUGAAAAGUCca--ACGg -3' miRNA: 3'- cUGUGCAGGUGCUUUUCAGucugUGC- -5' |
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11657 | 3' | -49.1 | NC_003102.1 | + | 54822 | 0.68 | 0.992871 |
Target: 5'- aACAUGUUCACuAAAAGUUGGACAa- -3' miRNA: 3'- cUGUGCAGGUGcUUUUCAGUCUGUgc -5' |
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11657 | 3' | -49.1 | NC_003102.1 | + | 97702 | 0.68 | 0.992871 |
Target: 5'- cGGCACgGUCCACGAucuAGUUugcauGGugACa -3' miRNA: 3'- -CUGUG-CAGGUGCUuu-UCAG-----UCugUGc -5' |
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11657 | 3' | -49.1 | NC_003102.1 | + | 55955 | 0.68 | 0.989216 |
Target: 5'- aACAUGUUaGCGAAAcGUCAGACAa- -3' miRNA: 3'- cUGUGCAGgUGCUUUuCAGUCUGUgc -5' |
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11657 | 3' | -49.1 | NC_003102.1 | + | 128205 | 0.68 | 0.993841 |
Target: 5'- uGCACGUgUACGAAucgGGGUCuaaaaacGGCACGa -3' miRNA: 3'- cUGUGCAgGUGCUU---UUCAGu------CUGUGC- -5' |
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11657 | 3' | -49.1 | NC_003102.1 | + | 19988 | 0.68 | 0.993749 |
Target: 5'- -cCGCGcCCACGAgcgugaucucgucAAAaUCGGACACGg -3' miRNA: 3'- cuGUGCaGGUGCU-------------UUUcAGUCUGUGC- -5' |
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11657 | 3' | -49.1 | NC_003102.1 | + | 76323 | 0.69 | 0.984242 |
Target: 5'- --aACGUa---GAAAAGUCAGACGCGu -3' miRNA: 3'- cugUGCAggugCUUUUCAGUCUGUGC- -5' |
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11657 | 3' | -49.1 | NC_003102.1 | + | 132259 | 0.69 | 0.980067 |
Target: 5'- aACAUGUUCACGAAAAGUCuaACAa- -3' miRNA: 3'- cUGUGCAGGUGCUUUUCAGucUGUgc -5' |
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11657 | 3' | -49.1 | NC_003102.1 | + | 137404 | 0.69 | 0.986062 |
Target: 5'- -cUACGgCUAUGAAAAGUCGGcCGCGu -3' miRNA: 3'- cuGUGCaGGUGCUUUUCAGUCuGUGC- -5' |
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11657 | 3' | -49.1 | NC_003102.1 | + | 47260 | 0.69 | 0.984242 |
Target: 5'- ---gUGUCCcacacGCGAAAuAGUCAGGCGCGu -3' miRNA: 3'- cuguGCAGG-----UGCUUU-UCAGUCUGUGC- -5' |
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11657 | 3' | -49.1 | NC_003102.1 | + | 55488 | 0.69 | 0.980067 |
Target: 5'- aACAUGUUCACGAAAAGUCcaACAa- -3' miRNA: 3'- cUGUGCAGGUGCUUUUCAGucUGUgc -5' |
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11657 | 3' | -49.1 | NC_003102.1 | + | 132837 | 0.69 | 0.987717 |
Target: 5'- aACAUGUUCACGAAAAGUauaaCAGGuuCAUGa -3' miRNA: 3'- cUGUGCAGGUGCUUUUCA----GUCU--GUGC- -5' |
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11657 | 3' | -49.1 | NC_003102.1 | + | 137328 | 0.69 | 0.986062 |
Target: 5'- -cUACGgCUAUGAAAAGUCGGcCGCGu -3' miRNA: 3'- cuGUGCaGGUGCUUUUCAGUCuGUGC- -5' |
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11657 | 3' | -49.1 | NC_003102.1 | + | 104682 | 0.7 | 0.972335 |
Target: 5'- aACAUGUCaACGAAAAGUCGGcCAgGu -3' miRNA: 3'- cUGUGCAGgUGCUUUUCAGUCuGUgC- -5' |
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11657 | 3' | -49.1 | NC_003102.1 | + | 20787 | 0.7 | 0.977695 |
Target: 5'- cGACuACGaCgACGAcGAGUUGGACGCGa -3' miRNA: 3'- -CUG-UGCaGgUGCUuUUCAGUCUGUGC- -5' |
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11657 | 3' | -49.1 | NC_003102.1 | + | 112735 | 0.7 | 0.972335 |
Target: 5'- aACAUGUCaACGAAAAGUCGGcCAgGu -3' miRNA: 3'- cUGUGCAGgUGCUUUUCAGUCuGUgC- -5' |
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11657 | 3' | -49.1 | NC_003102.1 | + | 89677 | 0.7 | 0.969332 |
Target: 5'- -cCACcagauUCUACGAAAAGUCAGcCACGu -3' miRNA: 3'- cuGUGc----AGGUGCUUUUCAGUCuGUGC- -5' |
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11657 | 3' | -49.1 | NC_003102.1 | + | 70561 | 0.71 | 0.958942 |
Target: 5'- gGACACGUCguCGAc-GGUCAGcugGCGCGc -3' miRNA: 3'- -CUGUGCAGguGCUuuUCAGUC---UGUGC- -5' |
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11657 | 3' | -49.1 | NC_003102.1 | + | 42630 | 0.71 | 0.958942 |
Target: 5'- aACAUGUUCAUaAAAAGUCAGGCAa- -3' miRNA: 3'- cUGUGCAGGUGcUUUUCAGUCUGUgc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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