Results 41 - 60 of 102 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11657 | 3' | -49.1 | NC_003102.1 | + | 40422 | 0.71 | 0.958942 |
Target: 5'- uGCGCGUCCACG-----UUAGACACa -3' miRNA: 3'- cUGUGCAGGUGCuuuucAGUCUGUGc -5' |
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11657 | 3' | -49.1 | NC_003102.1 | + | 26002 | 0.71 | 0.954999 |
Target: 5'- aACcUGUUUACGAAAAGUCGGcCACGu -3' miRNA: 3'- cUGuGCAGGUGCUUUUCAGUCuGUGC- -5' |
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11657 | 3' | -49.1 | NC_003102.1 | + | 61927 | 0.71 | 0.945902 |
Target: 5'- uGACGuggacguUGUCCACGAuuguGUCAGACAUu -3' miRNA: 3'- -CUGU-------GCAGGUGCUuuu-CAGUCUGUGc -5' |
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11657 | 3' | -49.1 | NC_003102.1 | + | 70561 | 0.71 | 0.958942 |
Target: 5'- gGACACGUCguCGAc-GGUCAGcugGCGCGc -3' miRNA: 3'- -CUGUGCAGguGCUuuUCAGUC---UGUGC- -5' |
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11657 | 3' | -49.1 | NC_003102.1 | + | 26928 | 0.71 | 0.954999 |
Target: 5'- aACAUGUUUACGAAAAGUCA--UACGg -3' miRNA: 3'- cUGUGCAGGUGCUUUUCAGUcuGUGC- -5' |
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11657 | 3' | -49.1 | NC_003102.1 | + | 137025 | 0.71 | 0.954999 |
Target: 5'- aACAUGUaCACGAAAAGUUGGcCACGu -3' miRNA: 3'- cUGUGCAgGUGCUUUUCAGUCuGUGC- -5' |
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11657 | 3' | -49.1 | NC_003102.1 | + | 89312 | 0.71 | 0.956606 |
Target: 5'- uACAUGUuuaaCCACGAAAAGUCGGccggguuugauuugaACGCGu -3' miRNA: 3'- cUGUGCA----GGUGCUUUUCAGUC---------------UGUGC- -5' |
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11657 | 3' | -49.1 | NC_003102.1 | + | 42630 | 0.71 | 0.958942 |
Target: 5'- aACAUGUUCAUaAAAAGUCAGGCAa- -3' miRNA: 3'- cUGUGCAGGUGcUUUUCAGUCUGUgc -5' |
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11657 | 3' | -49.1 | NC_003102.1 | + | 55137 | 0.71 | 0.962642 |
Target: 5'- aACAUGUUCAUGAAAAGUCuaACAUGu -3' miRNA: 3'- cUGUGCAGGUGCUUUUCAGucUGUGC- -5' |
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11657 | 3' | -49.1 | NC_003102.1 | + | 89401 | 0.72 | 0.920241 |
Target: 5'- uACuuGUUuaaaaCAUGAAAAGUCAGACACGu -3' miRNA: 3'- cUGugCAG-----GUGCUUUUCAGUCUGUGC- -5' |
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11657 | 3' | -49.1 | NC_003102.1 | + | 54893 | 0.72 | 0.941658 |
Target: 5'- aACAUGUUCACGAAAAGUCua--ACGg -3' miRNA: 3'- cUGUGCAGGUGCUUUUCAGucugUGC- -5' |
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11657 | 3' | -49.1 | NC_003102.1 | + | 26224 | 0.72 | 0.931473 |
Target: 5'- aACcCGaCUACGAAAAGUCAGACAa- -3' miRNA: 3'- cUGuGCaGGUGCUUUUCAGUCUGUgc -5' |
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11657 | 3' | -49.1 | NC_003102.1 | + | 26141 | 0.72 | 0.931473 |
Target: 5'- aACcCGaCUACGAAAAGUCAGACAa- -3' miRNA: 3'- cUGuGCaGGUGCUUUUCAGUCUGUgc -5' |
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11657 | 3' | -49.1 | NC_003102.1 | + | 132733 | 0.72 | 0.941658 |
Target: 5'- aACAUGUUCACGAAAAGUCua--ACGg -3' miRNA: 3'- cUGUGCAGGUGCUUUUCAGucugUGC- -5' |
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11657 | 3' | -49.1 | NC_003102.1 | + | 97840 | 0.73 | 0.901433 |
Target: 5'- aGACGgGUUugUACGAAAAGUCGGcCACGu -3' miRNA: 3'- -CUGUgCAG--GUGCUUUUCAGUCuGUGC- -5' |
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11657 | 3' | -49.1 | NC_003102.1 | + | 112708 | 0.74 | 0.872806 |
Target: 5'- aACAUGUUUAUGAAAAGUCAGA-ACGa -3' miRNA: 3'- cUGUGCAGGUGCUUUUCAGUCUgUGC- -5' |
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11657 | 3' | -49.1 | NC_003102.1 | + | 103442 | 0.74 | 0.872806 |
Target: 5'- uGGCGCaauaaCGuCGAAAAGUCAGACACGu -3' miRNA: 3'- -CUGUGcag--GU-GCUUUUCAGUCUGUGC- -5' |
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11657 | 3' | -49.1 | NC_003102.1 | + | 97727 | 0.74 | 0.848838 |
Target: 5'- aGACAgGUUugUACGAAAAGUCGGcCACGu -3' miRNA: 3'- -CUGUgCAG--GUGCUUUUCAGUCuGUGC- -5' |
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11657 | 3' | -49.1 | NC_003102.1 | + | 74815 | 0.74 | 0.880332 |
Target: 5'- uGAC-CGUCCACGAAgcGccugacgaUCGGGCACGu -3' miRNA: 3'- -CUGuGCAGGUGCUUuuC--------AGUCUGUGC- -5' |
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11657 | 3' | -49.1 | NC_003102.1 | + | 110373 | 0.74 | 0.880332 |
Target: 5'- gGGCGCGUCCACGAucauGUC-GACgGCGu -3' miRNA: 3'- -CUGUGCAGGUGCUuuu-CAGuCUG-UGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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