miRNA display CGI


Results 41 - 60 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11657 3' -49.1 NC_003102.1 + 133013 0.74 0.857053
Target:  5'- aACAUGUUCACGAAAAGUCuaACAUGu -3'
miRNA:   3'- cUGUGCAGGUGCUUUUCAGucUGUGC- -5'
11657 3' -49.1 NC_003102.1 + 10848 0.74 0.865045
Target:  5'- aACA-GUUCAUGAAAAGUCAGACAa- -3'
miRNA:   3'- cUGUgCAGGUGCUUUUCAGUCUGUgc -5'
11657 3' -49.1 NC_003102.1 + 42933 0.74 0.872806
Target:  5'- uGGCGCaauaaCAuCGAAAAGUCAGACGCGu -3'
miRNA:   3'- -CUGUGcag--GU-GCUUUUCAGUCUGUGC- -5'
11657 3' -49.1 NC_003102.1 + 103442 0.74 0.872806
Target:  5'- uGGCGCaauaaCGuCGAAAAGUCAGACACGu -3'
miRNA:   3'- -CUGUGcag--GU-GCUUUUCAGUCUGUGC- -5'
11657 3' -49.1 NC_003102.1 + 112708 0.74 0.872806
Target:  5'- aACAUGUUUAUGAAAAGUCAGA-ACGa -3'
miRNA:   3'- cUGUGCAGGUGCUUUUCAGUCUgUGC- -5'
11657 3' -49.1 NC_003102.1 + 74815 0.74 0.880332
Target:  5'- uGAC-CGUCCACGAAgcGccugacgaUCGGGCACGu -3'
miRNA:   3'- -CUGuGCAGGUGCUUuuC--------AGUCUGUGC- -5'
11657 3' -49.1 NC_003102.1 + 110373 0.74 0.880332
Target:  5'- gGGCGCGUCCACGAucauGUC-GACgGCGu -3'
miRNA:   3'- -CUGUGCAGGUGCUuuu-CAGuCUG-UGC- -5'
11657 3' -49.1 NC_003102.1 + 97840 0.73 0.901433
Target:  5'- aGACGgGUUugUACGAAAAGUCGGcCACGu -3'
miRNA:   3'- -CUGUgCAG--GUGCUUUUCAGUCuGUGC- -5'
11657 3' -49.1 NC_003102.1 + 89401 0.72 0.920241
Target:  5'- uACuuGUUuaaaaCAUGAAAAGUCAGACACGu -3'
miRNA:   3'- cUGugCAG-----GUGCUUUUCAGUCUGUGC- -5'
11657 3' -49.1 NC_003102.1 + 26141 0.72 0.931473
Target:  5'- aACcCGaCUACGAAAAGUCAGACAa- -3'
miRNA:   3'- cUGuGCaGGUGCUUUUCAGUCUGUgc -5'
11657 3' -49.1 NC_003102.1 + 26224 0.72 0.931473
Target:  5'- aACcCGaCUACGAAAAGUCAGACAa- -3'
miRNA:   3'- cUGuGCaGGUGCUUUUCAGUCUGUgc -5'
11657 3' -49.1 NC_003102.1 + 54893 0.72 0.941658
Target:  5'- aACAUGUUCACGAAAAGUCua--ACGg -3'
miRNA:   3'- cUGUGCAGGUGCUUUUCAGucugUGC- -5'
11657 3' -49.1 NC_003102.1 + 132733 0.72 0.941658
Target:  5'- aACAUGUUCACGAAAAGUCua--ACGg -3'
miRNA:   3'- cUGUGCAGGUGCUUUUCAGucugUGC- -5'
11657 3' -49.1 NC_003102.1 + 61927 0.71 0.945902
Target:  5'- uGACGuggacguUGUCCACGAuuguGUCAGACAUu -3'
miRNA:   3'- -CUGU-------GCAGGUGCUuuu-CAGUCUGUGc -5'
11657 3' -49.1 NC_003102.1 + 26002 0.71 0.954999
Target:  5'- aACcUGUUUACGAAAAGUCGGcCACGu -3'
miRNA:   3'- cUGuGCAGGUGCUUUUCAGUCuGUGC- -5'
11657 3' -49.1 NC_003102.1 + 26928 0.71 0.954999
Target:  5'- aACAUGUUUACGAAAAGUCA--UACGg -3'
miRNA:   3'- cUGUGCAGGUGCUUUUCAGUcuGUGC- -5'
11657 3' -49.1 NC_003102.1 + 137025 0.71 0.954999
Target:  5'- aACAUGUaCACGAAAAGUUGGcCACGu -3'
miRNA:   3'- cUGUGCAgGUGCUUUUCAGUCuGUGC- -5'
11657 3' -49.1 NC_003102.1 + 89312 0.71 0.956606
Target:  5'- uACAUGUuuaaCCACGAAAAGUCGGccggguuugauuugaACGCGu -3'
miRNA:   3'- cUGUGCA----GGUGCUUUUCAGUC---------------UGUGC- -5'
11657 3' -49.1 NC_003102.1 + 40422 0.71 0.958942
Target:  5'- uGCGCGUCCACG-----UUAGACACa -3'
miRNA:   3'- cUGUGCAGGUGCuuuucAGUCUGUGc -5'
11657 3' -49.1 NC_003102.1 + 70561 0.71 0.958942
Target:  5'- gGACACGUCguCGAc-GGUCAGcugGCGCGc -3'
miRNA:   3'- -CUGUGCAGguGCUuuUCAGUC---UGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.