miRNA display CGI


Results 41 - 60 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11657 3' -49.1 NC_003102.1 + 61927 0.71 0.945902
Target:  5'- uGACGuggacguUGUCCACGAuuguGUCAGACAUu -3'
miRNA:   3'- -CUGU-------GCAGGUGCUuuu-CAGUCUGUGc -5'
11657 3' -49.1 NC_003102.1 + 67152 0.74 0.857053
Target:  5'- uACAagaguaGUUaACGAAAAGUCAGACACGu -3'
miRNA:   3'- cUGUg-----CAGgUGCUUUUCAGUCUGUGC- -5'
11657 3' -49.1 NC_003102.1 + 67244 0.77 0.725693
Target:  5'- aACAUGUuuGCaAAAAGUCAGACACGu -3'
miRNA:   3'- cUGUGCAggUGcUUUUCAGUCUGUGC- -5'
11657 3' -49.1 NC_003102.1 + 67342 0.77 0.725693
Target:  5'- aACAUGUuuGCaAAAAGUCAGACACGu -3'
miRNA:   3'- cUGUGCAggUGcUUUUCAGUCUGUGC- -5'
11657 3' -49.1 NC_003102.1 + 67432 0.77 0.725693
Target:  5'- aACAUGUuuGCaAAAAGUCAGACACGu -3'
miRNA:   3'- cUGUGCAggUGcUUUUCAGUCUGUGC- -5'
11657 3' -49.1 NC_003102.1 + 69528 0.76 0.776074
Target:  5'- cGACgACGUCCAUGAGcGAGUCgacAGACACu -3'
miRNA:   3'- -CUG-UGCAGGUGCUU-UUCAG---UCUGUGc -5'
11657 3' -49.1 NC_003102.1 + 70561 0.71 0.958942
Target:  5'- gGACACGUCguCGAc-GGUCAGcugGCGCGc -3'
miRNA:   3'- -CUGUGCAGguGCUuuUCAGUC---UGUGC- -5'
11657 3' -49.1 NC_003102.1 + 70810 0.66 0.998018
Target:  5'- cGACuACGUaCACGAucGAGGUCuuauacgGGGCGCGa -3'
miRNA:   3'- -CUG-UGCAgGUGCU--UUUCAG-------UCUGUGC- -5'
11657 3' -49.1 NC_003102.1 + 72148 0.66 0.997671
Target:  5'- cGAuCGCGUCCGCGAucauguacuGAAG-CGcGACGCu -3'
miRNA:   3'- -CU-GUGCAGGUGCU---------UUUCaGU-CUGUGc -5'
11657 3' -49.1 NC_003102.1 + 74815 0.74 0.880332
Target:  5'- uGAC-CGUCCACGAAgcGccugacgaUCGGGCACGu -3'
miRNA:   3'- -CUGuGCAGGUGCUUuuC--------AGUCUGUGC- -5'
11657 3' -49.1 NC_003102.1 + 76323 0.69 0.984242
Target:  5'- --aACGUa---GAAAAGUCAGACGCGu -3'
miRNA:   3'- cugUGCAggugCUUUUCAGUCUGUGC- -5'
11657 3' -49.1 NC_003102.1 + 86081 0.66 0.998053
Target:  5'- gGACAUGauggCGCGAAc-GUCGGGCACGc -3'
miRNA:   3'- -CUGUGCag--GUGCUUuuCAGUCUGUGC- -5'
11657 3' -49.1 NC_003102.1 + 86158 0.66 0.998382
Target:  5'- aAguCGUCCACGAGcgugauGGUCuuGACGCa -3'
miRNA:   3'- cUguGCAGGUGCUUu-----UCAGu-CUGUGc -5'
11657 3' -49.1 NC_003102.1 + 89312 0.71 0.956606
Target:  5'- uACAUGUuuaaCCACGAAAAGUCGGccggguuugauuugaACGCGu -3'
miRNA:   3'- cUGUGCA----GGUGCUUUUCAGUC---------------UGUGC- -5'
11657 3' -49.1 NC_003102.1 + 89401 0.72 0.920241
Target:  5'- uACuuGUUuaaaaCAUGAAAAGUCAGACACGu -3'
miRNA:   3'- cUGugCAG-----GUGCUUUUCAGUCUGUGC- -5'
11657 3' -49.1 NC_003102.1 + 89426 0.89 0.201527
Target:  5'- aACAUGUCUAUGAAAAGUCAGACAUGu -3'
miRNA:   3'- cUGUGCAGGUGCUUUUCAGUCUGUGC- -5'
11657 3' -49.1 NC_003102.1 + 89481 0.66 0.997671
Target:  5'- -------aCACGAAAAGUCAGACAgGu -3'
miRNA:   3'- cugugcagGUGCUUUUCAGUCUGUgC- -5'
11657 3' -49.1 NC_003102.1 + 89602 0.78 0.662429
Target:  5'- ----aGUUUACGAAAAGUCGGACACGu -3'
miRNA:   3'- cugugCAGGUGCUUUUCAGUCUGUGC- -5'
11657 3' -49.1 NC_003102.1 + 89677 0.7 0.969332
Target:  5'- -cCACcagauUCUACGAAAAGUCAGcCACGu -3'
miRNA:   3'- cuGUGc----AGGUGCUUUUCAGUCuGUGC- -5'
11657 3' -49.1 NC_003102.1 + 97675 0.81 0.524541
Target:  5'- --gACGUUCACGAAAAGUCGGcCACGu -3'
miRNA:   3'- cugUGCAGGUGCUUUUCAGUCuGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.