miRNA display CGI


Results 21 - 40 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11657 3' -49.1 NC_003102.1 + 36177 0.76 0.795311
Target:  5'- aACAUGUuuGCuAAAAGUCGGACACGu -3'
miRNA:   3'- cUGUGCAggUGcUUUUCAGUCUGUGC- -5'
11657 3' -49.1 NC_003102.1 + 40422 0.71 0.958942
Target:  5'- uGCGCGUCCACG-----UUAGACACa -3'
miRNA:   3'- cUGUGCAGGUGCuuuucAGUCUGUGc -5'
11657 3' -49.1 NC_003102.1 + 42564 0.79 0.608868
Target:  5'- --aAUGUUCACGAAAAGUCAGACAa- -3'
miRNA:   3'- cugUGCAGGUGCUUUUCAGUCUGUgc -5'
11657 3' -49.1 NC_003102.1 + 42619 0.76 0.776074
Target:  5'- aACAUGUUCAUGAAAAGUUGGACAa- -3'
miRNA:   3'- cUGUGCAGGUGCUUUUCAGUCUGUgc -5'
11657 3' -49.1 NC_003102.1 + 42630 0.71 0.958942
Target:  5'- aACAUGUUCAUaAAAAGUCAGGCAa- -3'
miRNA:   3'- cUGUGCAGGUGcUUUUCAGUCUGUgc -5'
11657 3' -49.1 NC_003102.1 + 42933 0.74 0.872806
Target:  5'- uGGCGCaauaaCAuCGAAAAGUCAGACGCGu -3'
miRNA:   3'- -CUGUGcag--GU-GCUUUUCAGUCUGUGC- -5'
11657 3' -49.1 NC_003102.1 + 46847 0.67 0.995462
Target:  5'- gGACACGUCgCGucCGGAAGGcaaaAGACGCa -3'
miRNA:   3'- -CUGUGCAG-GU--GCUUUUCag--UCUGUGc -5'
11657 3' -49.1 NC_003102.1 + 47260 0.69 0.984242
Target:  5'- ---gUGUCCcacacGCGAAAuAGUCAGGCGCGu -3'
miRNA:   3'- cuguGCAGG-----UGCUUU-UCAGUCUGUGC- -5'
11657 3' -49.1 NC_003102.1 + 54254 0.66 0.997671
Target:  5'- cGACACGacccUCCguugcggaauacAUGAuugaaaugcaAAAGUCGGACACGu -3'
miRNA:   3'- -CUGUGC----AGG------------UGCU----------UUUCAGUCUGUGC- -5'
11657 3' -49.1 NC_003102.1 + 54628 0.76 0.795311
Target:  5'- aACAUGUuuGCuAAAAGUCGGACACGu -3'
miRNA:   3'- cUGUGCAggUGcUUUUCAGUCUGUGC- -5'
11657 3' -49.1 NC_003102.1 + 54729 0.67 0.994701
Target:  5'- aGAuCAUGUUCAUGAAAAGUCAuACAa- -3'
miRNA:   3'- -CU-GUGCAGGUGCUUUUCAGUcUGUgc -5'
11657 3' -49.1 NC_003102.1 + 54822 0.68 0.992871
Target:  5'- aACAUGUUCACuAAAAGUUGGACAa- -3'
miRNA:   3'- cUGUGCAGGUGcUUUUCAGUCUGUgc -5'
11657 3' -49.1 NC_003102.1 + 54893 0.72 0.941658
Target:  5'- aACAUGUUCACGAAAAGUCua--ACGg -3'
miRNA:   3'- cUGUGCAGGUGCUUUUCAGucugUGC- -5'
11657 3' -49.1 NC_003102.1 + 55137 0.71 0.962642
Target:  5'- aACAUGUUCAUGAAAAGUCuaACAUGu -3'
miRNA:   3'- cUGUGCAGGUGCUUUUCAGucUGUGC- -5'
11657 3' -49.1 NC_003102.1 + 55488 0.69 0.980067
Target:  5'- aACAUGUUCACGAAAAGUCcaACAa- -3'
miRNA:   3'- cUGUGCAGGUGCUUUUCAGucUGUgc -5'
11657 3' -49.1 NC_003102.1 + 55812 0.66 0.998662
Target:  5'- aACAUGUUCAUGAAAAGUCuaACAa- -3'
miRNA:   3'- cUGUGCAGGUGCUUUUCAGucUGUgc -5'
11657 3' -49.1 NC_003102.1 + 55955 0.68 0.989216
Target:  5'- aACAUGUUaGCGAAAcGUCAGACAa- -3'
miRNA:   3'- cUGUGCAGgUGCUUUuCAGUCUGUgc -5'
11657 3' -49.1 NC_003102.1 + 55960 0.78 0.662429
Target:  5'- uAUAUGUU-ACGAAAAGUCAGACACGu -3'
miRNA:   3'- cUGUGCAGgUGCUUUUCAGUCUGUGC- -5'
11657 3' -49.1 NC_003102.1 + 56051 0.91 0.158969
Target:  5'- aACAUGUUUACGAAAAGUCAGACACGu -3'
miRNA:   3'- cUGUGCAGGUGCUUUUCAGUCUGUGC- -5'
11657 3' -49.1 NC_003102.1 + 59279 0.66 0.997671
Target:  5'- uGACACGUU--CGAA---UCGGACACGa -3'
miRNA:   3'- -CUGUGCAGguGCUUuucAGUCUGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.