miRNA display CGI


Results 21 - 40 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11657 3' -49.1 NC_003102.1 + 97987 0.79 0.651732
Target:  5'- aACcCGUCUAUGAAAAGUCAGACAa- -3'
miRNA:   3'- cUGuGCAGGUGCUUUUCAGUCUGUgc -5'
11657 3' -49.1 NC_003102.1 + 97930 0.79 0.651732
Target:  5'- aACcCGUCUAUGAAAAGUCAGACAa- -3'
miRNA:   3'- cUGuGCAGGUGCUUUUCAGUCUGUgc -5'
11657 3' -49.1 NC_003102.1 + 33506 0.78 0.662429
Target:  5'- cACACGUCCACGAcucuGAGUUuGACACc -3'
miRNA:   3'- cUGUGCAGGUGCUu---UUCAGuCUGUGc -5'
11657 3' -49.1 NC_003102.1 + 89602 0.78 0.662429
Target:  5'- ----aGUUUACGAAAAGUCGGACACGu -3'
miRNA:   3'- cugugCAGGUGCUUUUCAGUCUGUGC- -5'
11657 3' -49.1 NC_003102.1 + 55960 0.78 0.662429
Target:  5'- uAUAUGUU-ACGAAAAGUCAGACACGu -3'
miRNA:   3'- cUGUGCAGgUGCUUUUCAGUCUGUGC- -5'
11657 3' -49.1 NC_003102.1 + 121927 0.78 0.694318
Target:  5'- aACGCGUUUAUGAAAAGUCAaACACGu -3'
miRNA:   3'- cUGUGCAGGUGCUUUUCAGUcUGUGC- -5'
11657 3' -49.1 NC_003102.1 + 121847 0.77 0.725693
Target:  5'- aACcUGaCUACGAAAAGUCAGACACGu -3'
miRNA:   3'- cUGuGCaGGUGCUUUUCAGUCUGUGC- -5'
11657 3' -49.1 NC_003102.1 + 67244 0.77 0.725693
Target:  5'- aACAUGUuuGCaAAAAGUCAGACACGu -3'
miRNA:   3'- cUGUGCAggUGcUUUUCAGUCUGUGC- -5'
11657 3' -49.1 NC_003102.1 + 67342 0.77 0.725693
Target:  5'- aACAUGUuuGCaAAAAGUCAGACACGu -3'
miRNA:   3'- cUGUGCAggUGcUUUUCAGUCUGUGC- -5'
11657 3' -49.1 NC_003102.1 + 67432 0.77 0.725693
Target:  5'- aACAUGUuuGCaAAAAGUCAGACACGu -3'
miRNA:   3'- cUGUGCAggUGcUUUUCAGUCUGUGC- -5'
11657 3' -49.1 NC_003102.1 + 42619 0.76 0.776074
Target:  5'- aACAUGUUCAUGAAAAGUUGGACAa- -3'
miRNA:   3'- cUGUGCAGGUGCUUUUCAGUCUGUgc -5'
11657 3' -49.1 NC_003102.1 + 69528 0.76 0.776074
Target:  5'- cGACgACGUCCAUGAGcGAGUCgacAGACACu -3'
miRNA:   3'- -CUG-UGCAGGUGCUU-UUCAG---UCUGUGc -5'
11657 3' -49.1 NC_003102.1 + 36177 0.76 0.795311
Target:  5'- aACAUGUuuGCuAAAAGUCGGACACGu -3'
miRNA:   3'- cUGUGCAggUGcUUUUCAGUCUGUGC- -5'
11657 3' -49.1 NC_003102.1 + 54628 0.76 0.795311
Target:  5'- aACAUGUuuGCuAAAAGUCGGACACGu -3'
miRNA:   3'- cUGUGCAggUGcUUUUCAGUCUGUGC- -5'
11657 3' -49.1 NC_003102.1 + 27057 0.75 0.813902
Target:  5'- aACAUGUUCACGAAAAGUCA--UACGg -3'
miRNA:   3'- cUGUGCAGGUGCUUUUCAGUcuGUGC- -5'
11657 3' -49.1 NC_003102.1 + 97873 0.75 0.82293
Target:  5'- aACcUGUCUAUGAAAAGUCAGACAa- -3'
miRNA:   3'- cUGuGCAGGUGCUUUUCAGUCUGUgc -5'
11657 3' -49.1 NC_003102.1 + 104479 0.75 0.831768
Target:  5'- --aACGgucaacCCACGAAAAGUCuGACACGu -3'
miRNA:   3'- cugUGCa-----GGUGCUUUUCAGuCUGUGC- -5'
11657 3' -49.1 NC_003102.1 + 103651 0.75 0.840407
Target:  5'- gGACACGUUugagCACGAAAAGUCGGcCAgGu -3'
miRNA:   3'- -CUGUGCAG----GUGCUUUUCAGUCuGUgC- -5'
11657 3' -49.1 NC_003102.1 + 97727 0.74 0.848838
Target:  5'- aGACAgGUUugUACGAAAAGUCGGcCACGu -3'
miRNA:   3'- -CUGUgCAG--GUGCUUUUCAGUCuGUGC- -5'
11657 3' -49.1 NC_003102.1 + 133013 0.74 0.857053
Target:  5'- aACAUGUUCACGAAAAGUCuaACAUGu -3'
miRNA:   3'- cUGUGCAGGUGCUUUUCAGucUGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.