miRNA display CGI


Results 21 - 40 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11657 3' -49.1 NC_003102.1 + 46847 0.67 0.995462
Target:  5'- gGACACGUCgCGucCGGAAGGcaaaAGACGCa -3'
miRNA:   3'- -CUGUGCAG-GU--GCUUUUCag--UCUGUGc -5'
11657 3' -49.1 NC_003102.1 + 54729 0.67 0.994701
Target:  5'- aGAuCAUGUUCAUGAAAAGUCAuACAa- -3'
miRNA:   3'- -CU-GUGCAGGUGCUUUUCAGUcUGUgc -5'
11657 3' -49.1 NC_003102.1 + 128205 0.68 0.993841
Target:  5'- uGCACGUgUACGAAucgGGGUCuaaaaacGGCACGa -3'
miRNA:   3'- cUGUGCAgGUGCUU---UUCAGu------CUGUGC- -5'
11657 3' -49.1 NC_003102.1 + 19988 0.68 0.993749
Target:  5'- -cCGCGcCCACGAgcgugaucucgucAAAaUCGGACACGg -3'
miRNA:   3'- cuGUGCaGGUGCU-------------UUUcAGUCUGUGC- -5'
11657 3' -49.1 NC_003102.1 + 54822 0.68 0.992871
Target:  5'- aACAUGUUCACuAAAAGUUGGACAa- -3'
miRNA:   3'- cUGUGCAGGUGcUUUUCAGUCUGUgc -5'
11657 3' -49.1 NC_003102.1 + 97702 0.68 0.992871
Target:  5'- cGGCACgGUCCACGAucuAGUUugcauGGugACa -3'
miRNA:   3'- -CUGUG-CAGGUGCUuu-UCAG-----UCugUGc -5'
11657 3' -49.1 NC_003102.1 + 55955 0.68 0.989216
Target:  5'- aACAUGUUaGCGAAAcGUCAGACAa- -3'
miRNA:   3'- cUGUGCAGgUGCUUUuCAGUCUGUgc -5'
11657 3' -49.1 NC_003102.1 + 132837 0.69 0.987717
Target:  5'- aACAUGUUCACGAAAAGUauaaCAGGuuCAUGa -3'
miRNA:   3'- cUGUGCAGGUGCUUUUCA----GUCU--GUGC- -5'
11657 3' -49.1 NC_003102.1 + 137404 0.69 0.986062
Target:  5'- -cUACGgCUAUGAAAAGUCGGcCGCGu -3'
miRNA:   3'- cuGUGCaGGUGCUUUUCAGUCuGUGC- -5'
11657 3' -49.1 NC_003102.1 + 137328 0.69 0.986062
Target:  5'- -cUACGgCUAUGAAAAGUCGGcCGCGu -3'
miRNA:   3'- cuGUGCaGGUGCUUUUCAGUCuGUGC- -5'
11657 3' -49.1 NC_003102.1 + 76323 0.69 0.984242
Target:  5'- --aACGUa---GAAAAGUCAGACGCGu -3'
miRNA:   3'- cugUGCAggugCUUUUCAGUCUGUGC- -5'
11657 3' -49.1 NC_003102.1 + 47260 0.69 0.984242
Target:  5'- ---gUGUCCcacacGCGAAAuAGUCAGGCGCGu -3'
miRNA:   3'- cuguGCAGG-----UGCUUU-UCAGUCUGUGC- -5'
11657 3' -49.1 NC_003102.1 + 55488 0.69 0.980067
Target:  5'- aACAUGUUCACGAAAAGUCcaACAa- -3'
miRNA:   3'- cUGUGCAGGUGCUUUUCAGucUGUgc -5'
11657 3' -49.1 NC_003102.1 + 132259 0.69 0.980067
Target:  5'- aACAUGUUCACGAAAAGUCuaACAa- -3'
miRNA:   3'- cUGUGCAGGUGCUUUUCAGucUGUgc -5'
11657 3' -49.1 NC_003102.1 + 20787 0.7 0.977695
Target:  5'- cGACuACGaCgACGAcGAGUUGGACGCGa -3'
miRNA:   3'- -CUG-UGCaGgUGCUuUUCAGUCUGUGC- -5'
11657 3' -49.1 NC_003102.1 + 112735 0.7 0.972335
Target:  5'- aACAUGUCaACGAAAAGUCGGcCAgGu -3'
miRNA:   3'- cUGUGCAGgUGCUUUUCAGUCuGUgC- -5'
11657 3' -49.1 NC_003102.1 + 104682 0.7 0.972335
Target:  5'- aACAUGUCaACGAAAAGUCGGcCAgGu -3'
miRNA:   3'- cUGUGCAGgUGCUUUUCAGUCuGUgC- -5'
11657 3' -49.1 NC_003102.1 + 89677 0.7 0.969332
Target:  5'- -cCACcagauUCUACGAAAAGUCAGcCACGu -3'
miRNA:   3'- cuGUGc----AGGUGCUUUUCAGUCuGUGC- -5'
11657 3' -49.1 NC_003102.1 + 132869 0.71 0.962642
Target:  5'- aACAUGUUCACGAAAAGUCuaACAgGu -3'
miRNA:   3'- cUGUGCAGGUGCUUUUCAGucUGUgC- -5'
11657 3' -49.1 NC_003102.1 + 55137 0.71 0.962642
Target:  5'- aACAUGUUCAUGAAAAGUCuaACAUGu -3'
miRNA:   3'- cUGUGCAGGUGCUUUUCAGucUGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.