miRNA display CGI


Results 21 - 40 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11657 3' -49.1 NC_003102.1 + 112735 0.7 0.972335
Target:  5'- aACAUGUCaACGAAAAGUCGGcCAgGu -3'
miRNA:   3'- cUGUGCAGgUGCUUUUCAGUCuGUgC- -5'
11657 3' -49.1 NC_003102.1 + 112733 0.66 0.997671
Target:  5'- aACAUGUUUAUGAAAAGUCAuACAa- -3'
miRNA:   3'- cUGUGCAGGUGCUUUUCAGUcUGUgc -5'
11657 3' -49.1 NC_003102.1 + 112708 0.74 0.872806
Target:  5'- aACAUGUUUAUGAAAAGUCAGA-ACGa -3'
miRNA:   3'- cUGUGCAGGUGCUUUUCAGUCUgUGC- -5'
11657 3' -49.1 NC_003102.1 + 112617 0.79 0.619577
Target:  5'- ----aGUCCACGAcuauaaAAAGUCAGACACGu -3'
miRNA:   3'- cugugCAGGUGCU------UUUCAGUCUGUGC- -5'
11657 3' -49.1 NC_003102.1 + 112536 1 0.045568
Target:  5'- -uCGCGUCCACGAAAAGUCAGACACGu -3'
miRNA:   3'- cuGUGCAGGUGCUUUUCAGUCUGUGC- -5'
11657 3' -49.1 NC_003102.1 + 110373 0.74 0.880332
Target:  5'- gGGCGCGUCCACGAucauGUC-GACgGCGu -3'
miRNA:   3'- -CUGUGCAGGUGCUuuu-CAGuCUG-UGC- -5'
11657 3' -49.1 NC_003102.1 + 107712 0.67 0.997228
Target:  5'- aGACACGaUCCAUGAuGAuUCGuACACGa -3'
miRNA:   3'- -CUGUGC-AGGUGCUuUUcAGUcUGUGC- -5'
11657 3' -49.1 NC_003102.1 + 104682 0.7 0.972335
Target:  5'- aACAUGUCaACGAAAAGUCGGcCAgGu -3'
miRNA:   3'- cUGUGCAGgUGCUUUUCAGUCuGUgC- -5'
11657 3' -49.1 NC_003102.1 + 104479 0.75 0.831768
Target:  5'- --aACGgucaacCCACGAAAAGUCuGACACGu -3'
miRNA:   3'- cugUGCa-----GGUGCUUUUCAGuCUGUGC- -5'
11657 3' -49.1 NC_003102.1 + 104315 1.1 0.012129
Target:  5'- cGACACGUCCACGAAAAGUCAGACACGu -3'
miRNA:   3'- -CUGUGCAGGUGCUUUUCAGUCUGUGC- -5'
11657 3' -49.1 NC_003102.1 + 103651 0.75 0.840407
Target:  5'- gGACACGUUugagCACGAAAAGUCGGcCAgGu -3'
miRNA:   3'- -CUGUGCAG----GUGCUUUUCAGUCuGUgC- -5'
11657 3' -49.1 NC_003102.1 + 103622 0.98 0.064026
Target:  5'- cGACAUGUUCACGAAAAGUCGGACGCGu -3'
miRNA:   3'- -CUGUGCAGGUGCUUUUCAGUCUGUGC- -5'
11657 3' -49.1 NC_003102.1 + 103563 1.05 0.022905
Target:  5'- cGACAUGUCCGCGAAAAGUCAGACACGu -3'
miRNA:   3'- -CUGUGCAGGUGCUUUUCAGUCUGUGC- -5'
11657 3' -49.1 NC_003102.1 + 103505 0.94 0.114878
Target:  5'- aACGUGUCCGCGAAAAGUCAGACACGu -3'
miRNA:   3'- cUGUGCAGGUGCUUUUCAGUCUGUGC- -5'
11657 3' -49.1 NC_003102.1 + 103442 0.74 0.872806
Target:  5'- uGGCGCaauaaCGuCGAAAAGUCAGACACGu -3'
miRNA:   3'- -CUGUGcag--GU-GCUUUUCAGUCUGUGC- -5'
11657 3' -49.1 NC_003102.1 + 100635 0.67 0.997082
Target:  5'- aGCGCGUUCACGcc-GGUCAgaaucaaaaaacucGACGCGc -3'
miRNA:   3'- cUGUGCAGGUGCuuuUCAGU--------------CUGUGC- -5'
11657 3' -49.1 NC_003102.1 + 97987 0.79 0.651732
Target:  5'- aACcCGUCUAUGAAAAGUCAGACAa- -3'
miRNA:   3'- cUGuGCAGGUGCUUUUCAGUCUGUgc -5'
11657 3' -49.1 NC_003102.1 + 97930 0.79 0.651732
Target:  5'- aACcCGUCUAUGAAAAGUCAGACAa- -3'
miRNA:   3'- cUGuGCAGGUGCUUUUCAGUCUGUgc -5'
11657 3' -49.1 NC_003102.1 + 97873 0.75 0.82293
Target:  5'- aACcUGUCUAUGAAAAGUCAGACAa- -3'
miRNA:   3'- cUGuGCAGGUGCUUUUCAGUCUGUgc -5'
11657 3' -49.1 NC_003102.1 + 97840 0.73 0.901433
Target:  5'- aGACGgGUUugUACGAAAAGUCGGcCACGu -3'
miRNA:   3'- -CUGUgCAG--GUGCUUUUCAGUCuGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.