miRNA display CGI


Results 1 - 20 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11657 3' -49.1 NC_003102.1 + 137404 0.69 0.986062
Target:  5'- -cUACGgCUAUGAAAAGUCGGcCGCGu -3'
miRNA:   3'- cuGUGCaGGUGCUUUUCAGUCuGUGC- -5'
11657 3' -49.1 NC_003102.1 + 137328 0.69 0.986062
Target:  5'- -cUACGgCUAUGAAAAGUCGGcCGCGu -3'
miRNA:   3'- cuGUGCaGGUGCUUUUCAGUCuGUGC- -5'
11657 3' -49.1 NC_003102.1 + 137282 1.01 0.039513
Target:  5'- aACAUGUCCACGAAAAGUCAGACACGu -3'
miRNA:   3'- cUGUGCAGGUGCUUUUCAGUCUGUGC- -5'
11657 3' -49.1 NC_003102.1 + 137205 1.01 0.039513
Target:  5'- aACAUGUCCACGAAAAGUCAGACACGu -3'
miRNA:   3'- cUGUGCAGGUGCUUUUCAGUCUGUGC- -5'
11657 3' -49.1 NC_003102.1 + 137127 1.06 0.021008
Target:  5'- aGACAUGUCCACGAAAAGUCAGACACGu -3'
miRNA:   3'- -CUGUGCAGGUGCUUUUCAGUCUGUGC- -5'
11657 3' -49.1 NC_003102.1 + 137025 0.71 0.954999
Target:  5'- aACAUGUaCACGAAAAGUUGGcCACGu -3'
miRNA:   3'- cUGUGCAgGUGCUUUUCAGUCuGUGC- -5'
11657 3' -49.1 NC_003102.1 + 133013 0.74 0.857053
Target:  5'- aACAUGUUCACGAAAAGUCuaACAUGu -3'
miRNA:   3'- cUGUGCAGGUGCUUUUCAGucUGUGC- -5'
11657 3' -49.1 NC_003102.1 + 132949 0.71 0.962642
Target:  5'- aACAUGUUCACGAAAAGUCuaACAgGu -3'
miRNA:   3'- cUGUGCAGGUGCUUUUCAGucUGUgC- -5'
11657 3' -49.1 NC_003102.1 + 132869 0.71 0.962642
Target:  5'- aACAUGUUCACGAAAAGUCuaACAgGu -3'
miRNA:   3'- cUGUGCAGGUGCUUUUCAGucUGUgC- -5'
11657 3' -49.1 NC_003102.1 + 132837 0.69 0.987717
Target:  5'- aACAUGUUCACGAAAAGUauaaCAGGuuCAUGa -3'
miRNA:   3'- cUGUGCAGGUGCUUUUCA----GUCU--GUGC- -5'
11657 3' -49.1 NC_003102.1 + 132733 0.72 0.941658
Target:  5'- aACAUGUUCACGAAAAGUCua--ACGg -3'
miRNA:   3'- cUGUGCAGGUGCUUUUCAGucugUGC- -5'
11657 3' -49.1 NC_003102.1 + 132641 0.66 0.998662
Target:  5'- aACAUGUUCAUGAAAAGUCuaACAa- -3'
miRNA:   3'- cUGUGCAGGUGCUUUUCAGucUGUgc -5'
11657 3' -49.1 NC_003102.1 + 132506 0.66 0.998662
Target:  5'- aACAUGUUCACGAAAAGUCca--ACu -3'
miRNA:   3'- cUGUGCAGGUGCUUUUCAGucugUGc -5'
11657 3' -49.1 NC_003102.1 + 132410 0.66 0.998662
Target:  5'- aACAUGUUCAUGAAAAGUCuaACAa- -3'
miRNA:   3'- cUGUGCAGGUGCUUUUCAGucUGUgc -5'
11657 3' -49.1 NC_003102.1 + 132291 0.66 0.998662
Target:  5'- aACAUGUUCAUGAAAAGUCuaACAa- -3'
miRNA:   3'- cUGUGCAGGUGCUUUUCAGucUGUgc -5'
11657 3' -49.1 NC_003102.1 + 132259 0.69 0.980067
Target:  5'- aACAUGUUCACGAAAAGUCuaACAa- -3'
miRNA:   3'- cUGUGCAGGUGCUUUUCAGucUGUgc -5'
11657 3' -49.1 NC_003102.1 + 128205 0.68 0.993841
Target:  5'- uGCACGUgUACGAAucgGGGUCuaaaaacGGCACGa -3'
miRNA:   3'- cUGUGCAgGUGCUU---UUCAGu------CUGUGC- -5'
11657 3' -49.1 NC_003102.1 + 121927 0.78 0.694318
Target:  5'- aACGCGUUUAUGAAAAGUCAaACACGu -3'
miRNA:   3'- cUGUGCAGGUGCUUUUCAGUcUGUGC- -5'
11657 3' -49.1 NC_003102.1 + 121847 0.77 0.725693
Target:  5'- aACcUGaCUACGAAAAGUCAGACACGu -3'
miRNA:   3'- cUGuGCaGGUGCUUUUCAGUCUGUGC- -5'
11657 3' -49.1 NC_003102.1 + 112819 0.88 0.235139
Target:  5'- cACAUGUUCACGAAAAGUCAGACAgGu -3'
miRNA:   3'- cUGUGCAGGUGCUUUUCAGUCUGUgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.