Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11660 | 5' | -62 | NC_003102.1 | + | 134947 | 0.68 | 0.505269 |
Target: 5'- cCGUCGCCGCucaacacgccgaCGCCGGCGGGcagcaCGAc -3' miRNA: 3'- aGCGGCGGCG------------GCGGCUGUCCua---GCUa -5' |
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11660 | 5' | -62 | NC_003102.1 | + | 134527 | 0.72 | 0.282048 |
Target: 5'- cCGCCGCCGCCGCCGcuacACAuuGGcacCGAa -3' miRNA: 3'- aGCGGCGGCGGCGGC----UGU--CCua-GCUa -5' |
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11660 | 5' | -62 | NC_003102.1 | + | 129123 | 0.67 | 0.582188 |
Target: 5'- -aGCgGCaGCUGCCGGCGGGGUagCGGc -3' miRNA: 3'- agCGgCGgCGGCGGCUGUCCUA--GCUa -5' |
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11660 | 5' | -62 | NC_003102.1 | + | 128953 | 0.67 | 0.562645 |
Target: 5'- cCGCCGCCGCuacccCGCCGGCAGc------ -3' miRNA: 3'- aGCGGCGGCG-----GCGGCUGUCcuagcua -5' |
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11660 | 5' | -62 | NC_003102.1 | + | 119316 | 0.66 | 0.611738 |
Target: 5'- gUCuCCGuuGCCGUCGACAGcGAuguaUUGAUu -3' miRNA: 3'- -AGcGGCggCGGCGGCUGUC-CU----AGCUA- -5' |
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11660 | 5' | -62 | NC_003102.1 | + | 111425 | 0.67 | 0.582188 |
Target: 5'- aCGCCGCCGCCGCCGcCu-------- -3' miRNA: 3'- aGCGGCGGCGGCGGCuGuccuagcua -5' |
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11660 | 5' | -62 | NC_003102.1 | + | 95881 | 0.68 | 0.524144 |
Target: 5'- aCGgUGCCGCCGCCGaACAGauGGUUGu- -3' miRNA: 3'- aGCgGCGGCGGCGGC-UGUC--CUAGCua -5' |
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11660 | 5' | -62 | NC_003102.1 | + | 92974 | 0.67 | 0.562645 |
Target: 5'- aCGCCGCCGCCGauaccgucuUUGACGcGGuUUGAUg -3' miRNA: 3'- aGCGGCGGCGGC---------GGCUGU-CCuAGCUA- -5' |
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11660 | 5' | -62 | NC_003102.1 | + | 92253 | 0.71 | 0.325379 |
Target: 5'- aCGCCGgCGCCGCCGucaccuaaauauggaACuguaucGGGAUCGGUu -3' miRNA: 3'- aGCGGCgGCGGCGGC---------------UG------UCCUAGCUA- -5' |
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11660 | 5' | -62 | NC_003102.1 | + | 91191 | 0.66 | 0.621626 |
Target: 5'- aCGCgGCCGCCGCU--CAGaaucgucucGAUCGAg -3' miRNA: 3'- aGCGgCGGCGGCGGcuGUC---------CUAGCUa -5' |
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11660 | 5' | -62 | NC_003102.1 | + | 89883 | 0.87 | 0.028244 |
Target: 5'- cCGCCGCCGCCGCCaGACAGGAugucaUCGGg -3' miRNA: 3'- aGCGGCGGCGGCGG-CUGUCCU-----AGCUa -5' |
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11660 | 5' | -62 | NC_003102.1 | + | 87600 | 0.74 | 0.223685 |
Target: 5'- cCaCCGCCGUCGCCGACGucGAUCGAUc -3' miRNA: 3'- aGcGGCGGCGGCGGCUGUc-CUAGCUA- -5' |
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11660 | 5' | -62 | NC_003102.1 | + | 78602 | 0.7 | 0.378216 |
Target: 5'- gUCGCCGUCGUCGCCGccgucaucuuguacCAGGAUacgCGAUc -3' miRNA: 3'- -AGCGGCGGCGGCGGCu-------------GUCCUA---GCUA- -5' |
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11660 | 5' | -62 | NC_003102.1 | + | 71904 | 0.66 | 0.621626 |
Target: 5'- -gGUCGCCGUCGgCGACAaGGAcagCGGc -3' miRNA: 3'- agCGGCGGCGGCgGCUGU-CCUa--GCUa -5' |
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11660 | 5' | -62 | NC_003102.1 | + | 66919 | 0.7 | 0.383004 |
Target: 5'- gUCGUCGUCGCCGCCG-CAGucgucaucGUCGGUc -3' miRNA: 3'- -AGCGGCGGCGGCGGCuGUCc-------UAGCUA- -5' |
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11660 | 5' | -62 | NC_003102.1 | + | 60362 | 0.7 | 0.407545 |
Target: 5'- aUCGCCGCCGCCGCCGcCGc------- -3' miRNA: 3'- -AGCGGCGGCGGCGGCuGUccuagcua -5' |
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11660 | 5' | -62 | NC_003102.1 | + | 59350 | 0.68 | 0.477525 |
Target: 5'- gUUGCCGCCGUCGCCGuCGccgcUCGAa -3' miRNA: 3'- -AGCGGCGGCGGCGGCuGUccu-AGCUa -5' |
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11660 | 5' | -62 | NC_003102.1 | + | 51590 | 0.66 | 0.611738 |
Target: 5'- uUUGUCGCCGCCGuuGuCGG--UCGAa -3' miRNA: 3'- -AGCGGCGGCGGCggCuGUCcuAGCUa -5' |
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11660 | 5' | -62 | NC_003102.1 | + | 48845 | 0.7 | 0.407545 |
Target: 5'- uUCGCCGCCGUCGCCGccGCcGcGUCGc- -3' miRNA: 3'- -AGCGGCGGCGGCGGC--UGuCcUAGCua -5' |
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11660 | 5' | -62 | NC_003102.1 | + | 46609 | 0.75 | 0.189204 |
Target: 5'- gUCGUCGUCGCCGCCGACguucccGGGcuccucGUCGAa -3' miRNA: 3'- -AGCGGCGGCGGCGGCUG------UCC------UAGCUa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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