miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11661 3' -54 NC_003102.1 + 22930 0.66 0.965232
Target:  5'- -aCGAaAGCGUCGCCGcCGcCGAauUGAa -3'
miRNA:   3'- ucGCUgUUGCAGCGGCaGCuGCU--ACU- -5'
11661 3' -54 NC_003102.1 + 46160 0.69 0.868619
Target:  5'- -aCGGCAAUGUCGuuGauggcggCGGCGGUGGu -3'
miRNA:   3'- ucGCUGUUGCAGCggCa------GCUGCUACU- -5'
11661 3' -54 NC_003102.1 + 93580 0.69 0.85327
Target:  5'- cGCGGCGcucucGCcUCGaCCGUCGACGAa-- -3'
miRNA:   3'- uCGCUGU-----UGcAGC-GGCAGCUGCUacu -5'
11661 3' -54 NC_003102.1 + 35056 1.09 0.004535
Target:  5'- cAGCGACAACGUCGCCGUCGACGAUGAg -3'
miRNA:   3'- -UCGCUGUUGCAGCGGCAGCUGCUACU- -5'
11661 3' -54 NC_003102.1 + 41474 0.66 0.952837
Target:  5'- uAGCGGCGGCGaggacaagauucgCGUCGUCGACu---- -3'
miRNA:   3'- -UCGCUGUUGCa------------GCGGCAGCUGcuacu -5'
11661 3' -54 NC_003102.1 + 113736 0.67 0.946088
Target:  5'- gAGCGGCcgccACGUCGauuCgGUCGACGAc-- -3'
miRNA:   3'- -UCGCUGu---UGCAGC---GgCAGCUGCUacu -5'
11661 3' -54 NC_003102.1 + 72692 0.67 0.936797
Target:  5'- cGGCGGCAACGauuCCGgcaUGugGAUGAc -3'
miRNA:   3'- -UCGCUGUUGCagcGGCa--GCugCUACU- -5'
11661 3' -54 NC_003102.1 + 105497 0.67 0.936797
Target:  5'- cAGCGGCGACGaCGgUGaCGACGAa-- -3'
miRNA:   3'- -UCGCUGUUGCaGCgGCaGCUGCUacu -5'
11661 3' -54 NC_003102.1 + 130895 0.68 0.917069
Target:  5'- uGGCGACGGCGUCGCUguguguagcauuuggGauauugggcgugaUCGACGAa-- -3'
miRNA:   3'- -UCGCUGUUGCAGCGG---------------C-------------AGCUGCUacu -5'
11661 3' -54 NC_003102.1 + 79726 0.69 0.875974
Target:  5'- cGCGAUuACGgguCCGUCGAgGGUGAg -3'
miRNA:   3'- uCGCUGuUGCagcGGCAGCUgCUACU- -5'
11661 3' -54 NC_003102.1 + 81571 0.68 0.890018
Target:  5'- uGCGGCGAggcuguCGUCGaaGUCGACGcgGu -3'
miRNA:   3'- uCGCUGUU------GCAGCggCAGCUGCuaCu -5'
11661 3' -54 NC_003102.1 + 127679 0.67 0.921056
Target:  5'- aAGCGGCGcaauCGUCGCaacaGUCG-CGAUa- -3'
miRNA:   3'- -UCGCUGUu---GCAGCGg---CAGCuGCUAcu -5'
11661 3' -54 NC_003102.1 + 3970 0.66 0.958256
Target:  5'- cGCGACGuaucgaACGUCGCagaGguaUCGACGAa-- -3'
miRNA:   3'- uCGCUGU------UGCAGCGg--C---AGCUGCUacu -5'
11661 3' -54 NC_003102.1 + 18466 0.69 0.883109
Target:  5'- cGGCGGCAGguuCGUCGgCGUCGGCc---- -3'
miRNA:   3'- -UCGCUGUU---GCAGCgGCAGCUGcuacu -5'
11661 3' -54 NC_003102.1 + 70246 0.66 0.958256
Target:  5'- ---aACGACGUCGCCGgUGACaAUGAc -3'
miRNA:   3'- ucgcUGUUGCAGCGGCaGCUGcUACU- -5'
11661 3' -54 NC_003102.1 + 31371 0.67 0.931792
Target:  5'- -uCGACAcUGUCGgacgguucaaCGUCGACGGUGAu -3'
miRNA:   3'- ucGCUGUuGCAGCg---------GCAGCUGCUACU- -5'
11661 3' -54 NC_003102.1 + 102036 0.69 0.875974
Target:  5'- aAGCGGCGGCGguggCGgUGgCGGCGGUGu -3'
miRNA:   3'- -UCGCUGUUGCa---GCgGCaGCUGCUACu -5'
11661 3' -54 NC_003102.1 + 87831 0.69 0.864103
Target:  5'- gAGaCGGCuuCGUCGCCGgcacgaaguugcuuuUCGGCGAcGAu -3'
miRNA:   3'- -UC-GCUGuuGCAGCGGC---------------AGCUGCUaCU- -5'
11661 3' -54 NC_003102.1 + 15905 0.66 0.954431
Target:  5'- uAGUgGACAuguuCGUgGCCGauUCGAUGGUGGc -3'
miRNA:   3'- -UCG-CUGUu---GCAgCGGC--AGCUGCUACU- -5'
11661 3' -54 NC_003102.1 + 15860 0.67 0.936797
Target:  5'- cGCGACu-CGUCGgCGUCG-CGAc-- -3'
miRNA:   3'- uCGCUGuuGCAGCgGCAGCuGCUacu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.