miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11666 3' -51.5 NC_003102.1 + 58835 0.66 0.991411
Target:  5'- gUAUUGAUCAagaUGauGCcgacuGCGACGGCg -3'
miRNA:   3'- uGUAACUAGUg--AUgcCGc----UGCUGCCG- -5'
11666 3' -51.5 NC_003102.1 + 24826 0.66 0.991411
Target:  5'- gAC-UUGAUCAUggUGGCGcCGAUGuGCa -3'
miRNA:   3'- -UGuAACUAGUGauGCCGCuGCUGC-CG- -5'
11666 3' -51.5 NC_003102.1 + 114957 0.66 0.991411
Target:  5'- uACGauaGUCACgGCGGUGuccaaaggcaACGGCGGCg -3'
miRNA:   3'- -UGUaacUAGUGaUGCCGC----------UGCUGCCG- -5'
11666 3' -51.5 NC_003102.1 + 19174 0.66 0.991411
Target:  5'- cACGUUGAUCGCgucguugaGGaCGACGcuuguguaccCGGCg -3'
miRNA:   3'- -UGUAACUAGUGaug-----CC-GCUGCu---------GCCG- -5'
11666 3' -51.5 NC_003102.1 + 119188 0.66 0.991411
Target:  5'- cCAggGAUCG-UACGGCGucuCGcACGGUu -3'
miRNA:   3'- uGUaaCUAGUgAUGCCGCu--GC-UGCCG- -5'
11666 3' -51.5 NC_003102.1 + 1563 0.66 0.991055
Target:  5'- -uGUUGAUCGgUAggcaggaucgauugUGGCGGCGGUGGUg -3'
miRNA:   3'- ugUAACUAGUgAU--------------GCCGCUGCUGCCG- -5'
11666 3' -51.5 NC_003102.1 + 13237 0.66 0.990177
Target:  5'- -aGUUGAUguCUACGGCGA-GACcGUu -3'
miRNA:   3'- ugUAACUAguGAUGCCGCUgCUGcCG- -5'
11666 3' -51.5 NC_003102.1 + 18377 0.66 0.990177
Target:  5'- aGCA-UGAUCuugGCGGuCGcguuccaaaACGGCGGCg -3'
miRNA:   3'- -UGUaACUAGugaUGCC-GC---------UGCUGCCG- -5'
11666 3' -51.5 NC_003102.1 + 48346 0.66 0.990177
Target:  5'- gGCAaUGAUgACUACGugagaacCGAUGACGuGCu -3'
miRNA:   3'- -UGUaACUAgUGAUGCc------GCUGCUGC-CG- -5'
11666 3' -51.5 NC_003102.1 + 117573 0.66 0.990177
Target:  5'- gACGUUGuuggcgacguccAUCACUAUcucgaucaauaGGCGAgcguCGACGGUc -3'
miRNA:   3'- -UGUAAC------------UAGUGAUG-----------CCGCU----GCUGCCG- -5'
11666 3' -51.5 NC_003102.1 + 42374 0.66 0.988809
Target:  5'- ----aGAUCAgCUggaacguguggaACGGCGGCGGaGGCg -3'
miRNA:   3'- uguaaCUAGU-GA------------UGCCGCUGCUgCCG- -5'
11666 3' -51.5 NC_003102.1 + 10791 0.66 0.988809
Target:  5'- ---aUGAguucCACUACGGCGccCGAUGcGCu -3'
miRNA:   3'- uguaACUa---GUGAUGCCGCu-GCUGC-CG- -5'
11666 3' -51.5 NC_003102.1 + 113006 0.66 0.988809
Target:  5'- gGCggUGGUgGuguCGGCGGUGGCGGCa -3'
miRNA:   3'- -UGuaACUAgUgauGCCGCUGCUGCCG- -5'
11666 3' -51.5 NC_003102.1 + 59511 0.66 0.987297
Target:  5'- aGCGgcGA-CGCgACGGCGGCaACGGUu -3'
miRNA:   3'- -UGUaaCUaGUGaUGCCGCUGcUGCCG- -5'
11666 3' -51.5 NC_003102.1 + 17484 0.66 0.987297
Target:  5'- ----aGAUCGCguCGGCGGguauguCGAUGGCg -3'
miRNA:   3'- uguaaCUAGUGauGCCGCU------GCUGCCG- -5'
11666 3' -51.5 NC_003102.1 + 131833 0.66 0.987297
Target:  5'- ----cGAUCAUUugauggaaucgACaGGCGACG-CGGCa -3'
miRNA:   3'- uguaaCUAGUGA-----------UG-CCGCUGCuGCCG- -5'
11666 3' -51.5 NC_003102.1 + 46578 0.66 0.987297
Target:  5'- ---gUGAUCAaaacauuugACGaaGACGACGGCa -3'
miRNA:   3'- uguaACUAGUga-------UGCcgCUGCUGCCG- -5'
11666 3' -51.5 NC_003102.1 + 36533 0.66 0.987297
Target:  5'- aACAUUGGaUACcggACGGcCGACGGauCGGUg -3'
miRNA:   3'- -UGUAACUaGUGa--UGCC-GCUGCU--GCCG- -5'
11666 3' -51.5 NC_003102.1 + 17747 0.66 0.985632
Target:  5'- -----------gGCGGCGGCGGCGGUg -3'
miRNA:   3'- uguaacuagugaUGCCGCUGCUGCCG- -5'
11666 3' -51.5 NC_003102.1 + 87975 0.66 0.985632
Target:  5'- cGCAgucAUCACgguagaaGGCGcaGCGGCGGCu -3'
miRNA:   3'- -UGUaacUAGUGaug----CCGC--UGCUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.