Results 41 - 45 of 45 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio #
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P value |
| Predicted miRNA align pattern | |||||||
| 11670 | 5' | -54.3 | NC_003102.1 | + | 135677 | 0.66 | 0.959412 |
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Target: 5'- aUCGaugGGAuCGCcgucGUCGCCAGAAAUugaauuACCg -3' miRNA: 3'- -AGCg--CCU-GCGc---UAGCGGUCUUUG------UGG- -5' |
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| 11670 | 5' | -54.3 | NC_003102.1 | + | 90322 | 0.66 | 0.959412 |
|
Target: 5'- --uUGGACGCGG-CGCCgaacaAGAcgaugGGCGCCg -3' miRNA: 3'- agcGCCUGCGCUaGCGG-----UCU-----UUGUGG- -5' |
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| 11670 | 5' | -54.3 | NC_003102.1 | + | 22962 | 0.66 | 0.943037 |
|
Target: 5'- -gGCGGACGCGuUCGUgAuGAugcguAUGCCg -3' miRNA: 3'- agCGCCUGCGCuAGCGgU-CUu----UGUGG- -5' |
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| 11670 | 5' | -54.3 | NC_003102.1 | + | 62187 | 0.66 | 0.947481 |
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Target: 5'- gCGaCGGGC-CGAaaCGCCGauuGAAACACCc -3' miRNA: 3'- aGC-GCCUGcGCUa-GCGGU---CUUUGUGG- -5' |
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| 11670 | 5' | -54.3 | NC_003102.1 | + | 21550 | 0.66 | 0.955665 |
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Target: 5'- uUCGCGaGACG-GGUCccauuuCUAGAAACACg -3' miRNA: 3'- -AGCGC-CUGCgCUAGc-----GGUCUUUGUGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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