Results 1 - 20 of 63 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11672 | 3' | -46.6 | NC_003102.1 | + | 137404 | 0.7 | 0.995213 |
Target: 5'- cUACGG-CuAUGAAAAGUCGGCCGc- -3' miRNA: 3'- uAUGUUaGuUGCUUUUCAGCCGGUcc -5' |
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11672 | 3' | -46.6 | NC_003102.1 | + | 137328 | 0.7 | 0.995213 |
Target: 5'- cUACGG-CuAUGAAAAGUCGGCCGc- -3' miRNA: 3'- uAUGUUaGuUGCUUUUCAGCCGGUcc -5' |
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11672 | 3' | -46.6 | NC_003102.1 | + | 137025 | 0.67 | 0.999704 |
Target: 5'- -aACAuguacACGAAAAGUUGGCCAc- -3' miRNA: 3'- uaUGUuagu-UGCUUUUCAGCCGGUcc -5' |
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11672 | 3' | -46.6 | NC_003102.1 | + | 134623 | 0.69 | 0.997981 |
Target: 5'- cAUACGAUaauugCGACGuGAGAGUUGGCCGa- -3' miRNA: 3'- -UAUGUUA-----GUUGC-UUUUCAGCCGGUcc -5' |
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11672 | 3' | -46.6 | NC_003102.1 | + | 133097 | 0.67 | 0.999405 |
Target: 5'- -cGCGGUCuacugaAGCGuaaucuAAAAGcCGGCCAGGu -3' miRNA: 3'- uaUGUUAG------UUGC------UUUUCaGCCGGUCC- -5' |
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11672 | 3' | -46.6 | NC_003102.1 | + | 126773 | 0.66 | 0.999821 |
Target: 5'- -cACGAUCGugGAGGAuaCGGCUuGGu -3' miRNA: 3'- uaUGUUAGUugCUUUUcaGCCGGuCC- -5' |
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11672 | 3' | -46.6 | NC_003102.1 | + | 121730 | 0.81 | 0.675209 |
Target: 5'- --uUAAgu-ACGAAAAGUCGGCCAGGu -3' miRNA: 3'- uauGUUaguUGCUUUUCAGCCGGUCC- -5' |
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11672 | 3' | -46.6 | NC_003102.1 | + | 121637 | 0.87 | 0.393922 |
Target: 5'- cGUACAuGUCGAugacuuauCGAAAAGUCGGCCAGGu -3' miRNA: 3'- -UAUGU-UAGUU--------GCUUUUCAGCCGGUCC- -5' |
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11672 | 3' | -46.6 | NC_003102.1 | + | 112935 | 0.84 | 0.522532 |
Target: 5'- cUACAaaGUUuACGAAAAGUUGGCCAGGu -3' miRNA: 3'- uAUGU--UAGuUGCUUUUCAGCCGGUCC- -5' |
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11672 | 3' | -46.6 | NC_003102.1 | + | 112735 | 0.98 | 0.10005 |
Target: 5'- -aACAuGUCAACGAAAAGUCGGCCAGGu -3' miRNA: 3'- uaUGU-UAGUUGCUUUUCAGCCGGUCC- -5' |
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11672 | 3' | -46.6 | NC_003102.1 | + | 112644 | 0.71 | 0.989935 |
Target: 5'- uUACAagAUUAuuuuAUGAAAAGUCaGCCAGGu -3' miRNA: 3'- uAUGU--UAGU----UGCUUUUCAGcCGGUCC- -5' |
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11672 | 3' | -46.6 | NC_003102.1 | + | 112394 | 0.67 | 0.999526 |
Target: 5'- -aACGGUguaGACGAGA--UCGGUCAGGu -3' miRNA: 3'- uaUGUUAg--UUGCUUUucAGCCGGUCC- -5' |
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11672 | 3' | -46.6 | NC_003102.1 | + | 111791 | 0.66 | 0.99992 |
Target: 5'- -aACGAUC--UGGGAGG-CGGCgCAGGa -3' miRNA: 3'- uaUGUUAGuuGCUUUUCaGCCG-GUCC- -5' |
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11672 | 3' | -46.6 | NC_003102.1 | + | 104801 | 0.93 | 0.179454 |
Target: 5'- -cACAAUCAACaAAAAGUCGGCCAGGu -3' miRNA: 3'- uaUGUUAGUUGcUUUUCAGCCGGUCC- -5' |
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11672 | 3' | -46.6 | NC_003102.1 | + | 104682 | 0.98 | 0.10005 |
Target: 5'- -aACAuGUCAACGAAAAGUCGGCCAGGu -3' miRNA: 3'- uaUGU-UAGUUGCUUUUCAGCCGGUCC- -5' |
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11672 | 3' | -46.6 | NC_003102.1 | + | 104601 | 0.69 | 0.997576 |
Target: 5'- aAUAaAGUUuAUGAAAAGUCGGCCAc- -3' miRNA: 3'- -UAUgUUAGuUGCUUUUCAGCCGGUcc -5' |
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11672 | 3' | -46.6 | NC_003102.1 | + | 104526 | 0.79 | 0.749143 |
Target: 5'- uGUGCAAUaauuGCGucaucuaAAAAGUCGGCCAGGu -3' miRNA: 3'- -UAUGUUAgu--UGC-------UUUUCAGCCGGUCC- -5' |
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11672 | 3' | -46.6 | NC_003102.1 | + | 103821 | 0.88 | 0.333687 |
Target: 5'- --uCAAUCuAUGAAGAGUCGGCCAGGu -3' miRNA: 3'- uauGUUAGuUGCUUUUCAGCCGGUCC- -5' |
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11672 | 3' | -46.6 | NC_003102.1 | + | 103768 | 0.82 | 0.631216 |
Target: 5'- -aACAuGUCGAUGGucaaAAAGUCGGCCAGGu -3' miRNA: 3'- uaUGU-UAGUUGCU----UUUCAGCCGGUCC- -5' |
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11672 | 3' | -46.6 | NC_003102.1 | + | 103709 | 0.82 | 0.620195 |
Target: 5'- -gACAuGUCGAUGGucaaAAAGUCGGCCAGGu -3' miRNA: 3'- uaUGU-UAGUUGCU----UUUCAGCCGGUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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