Results 1 - 20 of 65 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11673 | 3' | -46.1 | NC_003102.1 | + | 137449 | 0.8 | 0.715783 |
Target: 5'- cAAACgUGUCUGACUUUUCGUGg--- -3' miRNA: 3'- aUUUGgACAGACUGAAAAGCACagag -5' |
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11673 | 3' | -46.1 | NC_003102.1 | + | 137372 | 0.8 | 0.715783 |
Target: 5'- cAAACgUGUCUGACUUUUCGUGg--- -3' miRNA: 3'- aUUUGgACAGACUGAAAAGCACagag -5' |
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11673 | 3' | -46.1 | NC_003102.1 | + | 137296 | 0.85 | 0.485561 |
Target: 5'- cAAACgUGUCUGACUUUUCGUGgacaugucUCUCg -3' miRNA: 3'- aUUUGgACAGACUGAAAAGCAC--------AGAG- -5' |
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11673 | 3' | -46.1 | NC_003102.1 | + | 137057 | 0.68 | 0.998987 |
Target: 5'- uUGAACCUGUCgGACUUUUCa------ -3' miRNA: 3'- -AUUUGGACAGaCUGAAAAGcacagag -5' |
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11673 | 3' | -46.1 | NC_003102.1 | + | 133033 | 0.66 | 0.999848 |
Target: 5'- aUAAACUUGUUaGACUUUUUGUGa--- -3' miRNA: 3'- -AUUUGGACAGaCUGAAAAGCACagag -5' |
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11673 | 3' | -46.1 | NC_003102.1 | + | 132969 | 0.67 | 0.999802 |
Target: 5'- aUGAACUUGUUaGACUUUUUGUGa--- -3' miRNA: 3'- -AUUUGGACAGaCUGAAAAGCACagag -5' |
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11673 | 3' | -46.1 | NC_003102.1 | + | 132780 | 0.77 | 0.862517 |
Target: 5'- aUGAACCUGUUaGACUUUUCGUGa--- -3' miRNA: 3'- -AUUUGGACAGaCUGAAAAGCACagag -5' |
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11673 | 3' | -46.1 | NC_003102.1 | + | 132701 | 0.77 | 0.862517 |
Target: 5'- aUGAACCUGUUaGACUUUUCGUGa--- -3' miRNA: 3'- -AUUUGGACAGaCUGAAAAGCACagag -5' |
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11673 | 3' | -46.1 | NC_003102.1 | + | 132669 | 0.7 | 0.995517 |
Target: 5'- aUGAACCUGUUauACUUUUCGUGa--- -3' miRNA: 3'- -AUUUGGACAGacUGAAAAGCACagag -5' |
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11673 | 3' | -46.1 | NC_003102.1 | + | 132193 | 0.73 | 0.970816 |
Target: 5'- -uAACUUGUCUGACUUUUCGUu---- -3' miRNA: 3'- auUUGGACAGACUGAAAAGCAcagag -5' |
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11673 | 3' | -46.1 | NC_003102.1 | + | 132090 | 0.71 | 0.990395 |
Target: 5'- aUAAACUUGUUaGACUUUUCGUGa--- -3' miRNA: 3'- -AUUUGGACAGaCUGAAAAGCACagag -5' |
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11673 | 3' | -46.1 | NC_003102.1 | + | 121814 | 0.66 | 0.999884 |
Target: 5'- cGAACCUGgCcGACUUUUCGauaaGUCaUCg -3' miRNA: 3'- aUUUGGACaGaCUGAAAAGCa---CAG-AG- -5' |
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11673 | 3' | -46.1 | NC_003102.1 | + | 121680 | 0.83 | 0.571536 |
Target: 5'- cGAACgUGUCUGACUUUUCGUaGUCa- -3' miRNA: 3'- aUUUGgACAGACUGAAAAGCA-CAGag -5' |
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11673 | 3' | -46.1 | NC_003102.1 | + | 112786 | 0.7 | 0.996206 |
Target: 5'- cGAACgUGUCUGACUUUuuauagUCGUGg--- -3' miRNA: 3'- aUUUGgACAGACUGAAA------AGCACagag -5' |
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11673 | 3' | -46.1 | NC_003102.1 | + | 112702 | 0.86 | 0.444908 |
Target: 5'- cGAACgUGUCUGACUUUUCGUGgacgcgagCUCg -3' miRNA: 3'- aUUUGgACAGACUGAAAAGCACa-------GAG- -5' |
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11673 | 3' | -46.1 | NC_003102.1 | + | 112652 | 0.9 | 0.267287 |
Target: 5'- cGAACCUGUCUGACUUUUCGUGa--- -3' miRNA: 3'- aUUUGGACAGACUGAAAAGCACagag -5' |
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11673 | 3' | -46.1 | NC_003102.1 | + | 112471 | 0.66 | 0.999934 |
Target: 5'- cGAACCUGgCUGACUUUUCa------ -3' miRNA: 3'- aUUUGGACaGACUGAAAAGcacagag -5' |
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11673 | 3' | -46.1 | NC_003102.1 | + | 104649 | 0.71 | 0.988963 |
Target: 5'- cGAACgUGUCaGACUUUUCGUGg--- -3' miRNA: 3'- aUUUGgACAGaCUGAAAAGCACagag -5' |
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11673 | 3' | -46.1 | NC_003102.1 | + | 104483 | 0.81 | 0.671778 |
Target: 5'- cGAACgUGUCUGACUUUUCGUGg--- -3' miRNA: 3'- aUUUGgACAGACUGAAAAGCACagag -5' |
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11673 | 3' | -46.1 | NC_003102.1 | + | 103732 | 0.77 | 0.854106 |
Target: 5'- uUAAACgUGUCUGACUUUUCGcggacaUGUCg- -3' miRNA: 3'- -AUUUGgACAGACUGAAAAGC------ACAGag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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