miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11673 5' -43.3 NC_003102.1 + 26924 0.66 1
Target:  5'- ---uGUUUACGAAAAGUC--AUACGg -3'
miRNA:   3'- auuuCAAAUGCUUUUCAGccUGUGCa -5'
11673 5' -43.3 NC_003102.1 + 42615 0.66 1
Target:  5'- ---uGUUcAUGAAAAGUUGGACAaGUu -3'
miRNA:   3'- auuuCAAaUGCUUUUCAGCCUGUgCA- -5'
11673 5' -43.3 NC_003102.1 + 112731 0.66 1
Target:  5'- ---uGUcaACGAAAAGUCGGcCAgGUu -3'
miRNA:   3'- auuuCAaaUGCUUUUCAGCCuGUgCA- -5'
11673 5' -43.3 NC_003102.1 + 104678 0.66 1
Target:  5'- ---uGUcaACGAAAAGUCGGcCAgGUu -3'
miRNA:   3'- auuuCAaaUGCUUUUCAGCCuGUgCA- -5'
11673 5' -43.3 NC_003102.1 + 103455 0.66 1
Target:  5'- --------uCGAAAAGUCaGACACGUu -3'
miRNA:   3'- auuucaaauGCUUUUCAGcCUGUGCA- -5'
11673 5' -43.3 NC_003102.1 + 61334 0.66 1
Target:  5'- aAGAGUaUAUaguagacuuaaaGAAAAGUCaGACACGUu -3'
miRNA:   3'- aUUUCAaAUG------------CUUUUCAGcCUGUGCA- -5'
11673 5' -43.3 NC_003102.1 + 61768 0.67 0.999999
Target:  5'- -uAAGUUugauucggucagacUACGAAaacguucaGAGaUCGGACACGUc -3'
miRNA:   3'- auUUCAA--------------AUGCUU--------UUC-AGCCUGUGCA- -5'
11673 5' -43.3 NC_003102.1 + 97787 0.67 0.999999
Target:  5'- -cGGGUUugUACGAAAAGU-GGcCACGUu -3'
miRNA:   3'- auUUCAA--AUGCUUUUCAgCCuGUGCA- -5'
11673 5' -43.3 NC_003102.1 + 89316 0.67 0.999999
Target:  5'- ---uGUUUaaccACGAAAAGUCGGccggguuugauuugaACGCGUc -3'
miRNA:   3'- auuuCAAA----UGCUUUUCAGCC---------------UGUGCA- -5'
11673 5' -43.3 NC_003102.1 + 49947 0.66 0.999999
Target:  5'- aGGAGUUUGCGGAucGUgcUGGGCguucGCGg -3'
miRNA:   3'- aUUUCAAAUGCUUuuCA--GCCUG----UGCa -5'
11673 5' -43.3 NC_003102.1 + 112815 0.67 0.999997
Target:  5'- ---uGUUcACGAAAAGUCaGACAgGUu -3'
miRNA:   3'- auuuCAAaUGCUUUUCAGcCUGUgCA- -5'
11673 5' -43.3 NC_003102.1 + 103646 0.67 0.999997
Target:  5'- ---cGUUUgagcACGAAAAGUCGGcCAgGUu -3'
miRNA:   3'- auuuCAAA----UGCUUUUCAGCCuGUgCA- -5'
11673 5' -43.3 NC_003102.1 + 26520 0.68 0.999993
Target:  5'- --------uCGAAAAGUCGGcCACGUu -3'
miRNA:   3'- auuucaaauGCUUUUCAGCCuGUGCA- -5'
11673 5' -43.3 NC_003102.1 + 89405 0.68 0.999986
Target:  5'- ---uGUUUaaaacAUGAAAAGUCaGACACGUu -3'
miRNA:   3'- auuuCAAA-----UGCUUUUCAGcCUGUGCA- -5'
11673 5' -43.3 NC_003102.1 + 89422 0.68 0.999986
Target:  5'- ---uGUcUAUGAAAAGUCaGACAUGUu -3'
miRNA:   3'- auuuCAaAUGCUUUUCAGcCUGUGCA- -5'
11673 5' -43.3 NC_003102.1 + 10404 0.69 0.999981
Target:  5'- -uAAGUUggccucACGAAAAGUCGGcCAgGUu -3'
miRNA:   3'- auUUCAAa-----UGCUUUUCAGCCuGUgCA- -5'
11673 5' -43.3 NC_003102.1 + 31243 0.69 0.999981
Target:  5'- ------cUACGAGagcgucGAGUUGGACACGa -3'
miRNA:   3'- auuucaaAUGCUU------UUCAGCCUGUGCa -5'
11673 5' -43.3 NC_003102.1 + 10561 0.69 0.999974
Target:  5'- aAAAGUgauucagcACGAAAAGUCGGcCAgGUu -3'
miRNA:   3'- aUUUCAaa------UGCUUUUCAGCCuGUgCA- -5'
11673 5' -43.3 NC_003102.1 + 137033 0.69 0.999974
Target:  5'- -------cACGAAAAGUUGGcCACGUu -3'
miRNA:   3'- auuucaaaUGCUUUUCAGCCuGUGCA- -5'
11673 5' -43.3 NC_003102.1 + 89513 0.69 0.999974
Target:  5'- ---uGUUUGacaAAAAGUUGGACGCGUu -3'
miRNA:   3'- auuuCAAAUgc-UUUUCAGCCUGUGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.