miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11676 5' -51.5 NC_003102.1 + 18384 0.66 0.991237
Target:  5'- uUCAUCGAGcAUGAucuuGGCGGuCGCguuCCa -3'
miRNA:   3'- -AGUAGCUC-UGUUu---CUGCC-GCGacuGG- -5'
11676 5' -51.5 NC_003102.1 + 91359 0.66 0.989983
Target:  5'- -gAUCGAGACGAuucugagcGGCGGcCGCgu-CCg -3'
miRNA:   3'- agUAGCUCUGUUu-------CUGCC-GCGacuGG- -5'
11676 5' -51.5 NC_003102.1 + 75862 0.66 0.989983
Target:  5'- gUCGUCGu--CGGuGACGGCGCc-GCCg -3'
miRNA:   3'- -AGUAGCucuGUUuCUGCCGCGacUGG- -5'
11676 5' -51.5 NC_003102.1 + 65250 0.66 0.989983
Target:  5'- aCAUCGGGcCGaagcggagGAGGCGGCGauaGACa -3'
miRNA:   3'- aGUAGCUCuGU--------UUCUGCCGCga-CUGg -5'
11676 5' -51.5 NC_003102.1 + 20876 0.66 0.989983
Target:  5'- ---cCGAGuCGAcuugGGGCGGCGgUGGCa -3'
miRNA:   3'- aguaGCUCuGUU----UCUGCCGCgACUGg -5'
11676 5' -51.5 NC_003102.1 + 94833 0.66 0.989581
Target:  5'- ---aCGAGACGgacGGGAUGGCGUUucuaauagucuagcGGCCc -3'
miRNA:   3'- aguaGCUCUGU---UUCUGCCGCGA--------------CUGG- -5'
11676 5' -51.5 NC_003102.1 + 134793 0.66 0.989581
Target:  5'- -uGUUGAG-CGgcGACGGUucgcaaucgugcgaGCUGGCCa -3'
miRNA:   3'- agUAGCUCuGUuuCUGCCG--------------CGACUGG- -5'
11676 5' -51.5 NC_003102.1 + 74014 0.66 0.987058
Target:  5'- aUCcUCGAGAUucGGGGCcgagGGUGCUG-CCg -3'
miRNA:   3'- -AGuAGCUCUGu-UUCUG----CCGCGACuGG- -5'
11676 5' -51.5 NC_003102.1 + 42379 0.66 0.986063
Target:  5'- -uGUCGAGAUcagcuggaacgugugGAAcGGCGGCGgaGGCg -3'
miRNA:   3'- agUAGCUCUG---------------UUU-CUGCCGCgaCUGg -5'
11676 5' -51.5 NC_003102.1 + 87435 0.66 0.985367
Target:  5'- -gAUCGAucGACGucggcGACGGCGgUGGCa -3'
miRNA:   3'- agUAGCU--CUGUuu---CUGCCGCgACUGg -5'
11676 5' -51.5 NC_003102.1 + 112998 0.67 0.979281
Target:  5'- gUCGUCGuGGCGGugguGGuguCGGCGgUGGCg -3'
miRNA:   3'- -AGUAGCuCUGUU----UCu--GCCGCgACUGg -5'
11676 5' -51.5 NC_003102.1 + 93595 0.67 0.976885
Target:  5'- gCGUUGGGAUuuuugcGCGGCGCUcucgccucGACCg -3'
miRNA:   3'- aGUAGCUCUGuuuc--UGCCGCGA--------CUGG- -5'
11676 5' -51.5 NC_003102.1 + 126184 0.67 0.976634
Target:  5'- gCGUCuuGAUAGAaacucacgaaaauGGCGGCGC-GACCg -3'
miRNA:   3'- aGUAGcuCUGUUU-------------CUGCCGCGaCUGG- -5'
11676 5' -51.5 NC_003102.1 + 121417 0.67 0.974291
Target:  5'- aCAgggCGAGAagaugcaauccCAAuacGGGCguguGGCGCUGACCc -3'
miRNA:   3'- aGUa--GCUCU-----------GUU---UCUG----CCGCGACUGG- -5'
11676 5' -51.5 NC_003102.1 + 107517 0.67 0.974291
Target:  5'- gUCAagGuuGCGcAGACGGUGCUGAa- -3'
miRNA:   3'- -AGUagCucUGUuUCUGCCGCGACUgg -5'
11676 5' -51.5 NC_003102.1 + 135082 0.67 0.971491
Target:  5'- -gAUUGgagaGGGCGAcGACGGCGgUGGCUg -3'
miRNA:   3'- agUAGC----UCUGUUuCUGCCGCgACUGG- -5'
11676 5' -51.5 NC_003102.1 + 136440 0.68 0.968479
Target:  5'- cCAUCGucAGACAGaAGAuUGGCGC-GAUCg -3'
miRNA:   3'- aGUAGC--UCUGUU-UCU-GCCGCGaCUGG- -5'
11676 5' -51.5 NC_003102.1 + 101720 0.68 0.965248
Target:  5'- aCAUCGAuacggaaacGACAuAGACguGGUcaacaaGCUGACCg -3'
miRNA:   3'- aGUAGCU---------CUGUuUCUG--CCG------CGACUGG- -5'
11676 5' -51.5 NC_003102.1 + 120944 0.68 0.964234
Target:  5'- -gGUCGAcuugaauguaacccGGCGGAcACGGCGC-GACCg -3'
miRNA:   3'- agUAGCU--------------CUGUUUcUGCCGCGaCUGG- -5'
11676 5' -51.5 NC_003102.1 + 23309 0.68 0.96179
Target:  5'- aUCAUCGAGucGCAggucGAGACGG-GCacGCCg -3'
miRNA:   3'- -AGUAGCUC--UGU----UUCUGCCgCGacUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.