Results 21 - 28 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11687 | 3' | -54.2 | NC_003102.1 | + | 92977 | 0.68 | 0.874537 |
Target: 5'- ---cCGCCGCCGAUAccGUCuuugACGCg- -3' miRNA: 3'- gcaaGCGGCGGCUGUuaCAG----UGCGau -5' |
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11687 | 3' | -54.2 | NC_003102.1 | + | 133742 | 0.68 | 0.881812 |
Target: 5'- gCGUcgcaGCCGCCG-UAGUGUCGcCGCa- -3' miRNA: 3'- -GCAag--CGGCGGCuGUUACAGU-GCGau -5' |
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11687 | 3' | -54.2 | NC_003102.1 | + | 6711 | 0.67 | 0.908563 |
Target: 5'- gGUgcCGCUGCCGcCGGUGUUGgCGCUGc -3' miRNA: 3'- gCAa-GCGGCGGCuGUUACAGU-GCGAU- -5' |
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11687 | 3' | -54.2 | NC_003102.1 | + | 20467 | 0.67 | 0.920482 |
Target: 5'- --cUCGUCGUCGACAGUaGUauaGCGCg- -3' miRNA: 3'- gcaAGCGGCGGCUGUUA-CAg--UGCGau -5' |
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11687 | 3' | -54.2 | NC_003102.1 | + | 21297 | 0.66 | 0.925521 |
Target: 5'- --aUCGCCGCCGACcgaucgaGAUGguaaCAUGCc- -3' miRNA: 3'- gcaAGCGGCGGCUG-------UUACa---GUGCGau -5' |
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11687 | 3' | -54.2 | NC_003102.1 | + | 23716 | 0.66 | 0.926069 |
Target: 5'- gCGUa-GCgGCCGAgaaCAGUGUCGgGCUGg -3' miRNA: 3'- -GCAagCGgCGGCU---GUUACAGUgCGAU- -5' |
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11687 | 3' | -54.2 | NC_003102.1 | + | 71744 | 0.66 | 0.926069 |
Target: 5'- uGUccUUGUCGCCGACGGcgacCACGCUGc -3' miRNA: 3'- gCA--AGCGGCGGCUGUUaca-GUGCGAU- -5' |
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11687 | 3' | -54.2 | NC_003102.1 | + | 16731 | 1.07 | 0.005058 |
Target: 5'- uCGUUCGCCGCCGACAAUGUCACGCUAg -3' miRNA: 3'- -GCAAGCGGCGGCUGUUACAGUGCGAU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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