Results 21 - 28 of 28 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 11687 | 3' | -54.2 | NC_003102.1 | + | 66918 | 0.68 | 0.859317 |
|
Target: 5'- uCGUcgUCGCCGCCG-CAGUcGUCAuCGUc- -3' miRNA: 3'- -GCA--AGCGGCGGCuGUUA-CAGU-GCGau -5' |
|||||||
| 11687 | 3' | -54.2 | NC_003102.1 | + | 32719 | 0.7 | 0.761999 |
|
Target: 5'- gGUUCGCCGUCGcCGu--UCACGCUu -3' miRNA: 3'- gCAAGCGGCGGCuGUuacAGUGCGAu -5' |
|||||||
| 11687 | 3' | -54.2 | NC_003102.1 | + | 63236 | 0.71 | 0.752248 |
|
Target: 5'- cCGUgcCGCCGCCGAgAucGUGUCuCGCg- -3' miRNA: 3'- -GCAa-GCGGCGGCUgU--UACAGuGCGau -5' |
|||||||
| 11687 | 3' | -54.2 | NC_003102.1 | + | 19553 | 0.72 | 0.660708 |
|
Target: 5'- cCGUcaugcUCGCCGCCGACGccgAUGUCauuACGUa- -3' miRNA: 3'- -GCA-----AGCGGCGGCUGU---UACAG---UGCGau -5' |
|||||||
| 11687 | 3' | -54.2 | NC_003102.1 | + | 15699 | 0.73 | 0.598162 |
|
Target: 5'- aCG-UCGCgaCGCCGACGA-GUCGCGCg- -3' miRNA: 3'- -GCaAGCG--GCGGCUGUUaCAGUGCGau -5' |
|||||||
| 11687 | 3' | -54.2 | NC_003102.1 | + | 77596 | 0.73 | 0.587783 |
|
Target: 5'- cCGUUCGUCGUUaugGACAcUGUCGCGCa- -3' miRNA: 3'- -GCAAGCGGCGG---CUGUuACAGUGCGau -5' |
|||||||
| 11687 | 3' | -54.2 | NC_003102.1 | + | 18491 | 0.8 | 0.293534 |
|
Target: 5'- aGggCGCCGUCGACGAUGuUCGCGCc- -3' miRNA: 3'- gCaaGCGGCGGCUGUUAC-AGUGCGau -5' |
|||||||
| 11687 | 3' | -54.2 | NC_003102.1 | + | 16731 | 1.07 | 0.005058 |
|
Target: 5'- uCGUUCGCCGCCGACAAUGUCACGCUAg -3' miRNA: 3'- -GCAAGCGGCGGCUGUUACAGUGCGAU- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home