miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11692 3' -42.1 NC_003102.1 + 137127 0.66 1
Target:  5'- aGACAUGUcCAcGAAAAGUCAGaCAc- -3'
miRNA:   3'- -UUGUACAaGUaUUUUUCAGUCcGUuc -5'
11692 3' -42.1 NC_003102.1 + 67245 0.66 1
Target:  5'- aAACAUGUUUGcAAAAAGUCAGaCAc- -3'
miRNA:   3'- -UUGUACAAGUaUUUUUCAGUCcGUuc -5'
11692 3' -42.1 NC_003102.1 + 79510 0.66 1
Target:  5'- cGACAUGUUCGUGAGAucuauaugcgaguGugagucgcuuaaacuGUUAGGCAAu -3'
miRNA:   3'- -UUGUACAAGUAUUUU-------------U---------------CAGUCCGUUc -5'
11692 3' -42.1 NC_003102.1 + 132918 0.66 1
Target:  5'- aAACAUGUUCAUAAAuAGUCuGaUAAa -3'
miRNA:   3'- -UUGUACAAGUAUUUuUCAGuCcGUUc -5'
11692 3' -42.1 NC_003102.1 + 98038 0.66 1
Target:  5'- ------aUCAUGAAAAGUCAGaCAAGu -3'
miRNA:   3'- uuguacaAGUAUUUUUCAGUCcGUUC- -5'
11692 3' -42.1 NC_003102.1 + 67343 0.66 1
Target:  5'- uAACAUGUUUGcAAAAAGUCAGaCAc- -3'
miRNA:   3'- -UUGUACAAGUaUUUUUCAGUCcGUuc -5'
11692 3' -42.1 NC_003102.1 + 133365 0.66 1
Target:  5'- gAACAUGUUCA-GAAAAGUUAuaCAAGu -3'
miRNA:   3'- -UUGUACAAGUaUUUUUCAGUccGUUC- -5'
11692 3' -42.1 NC_003102.1 + 132507 0.66 1
Target:  5'- gAACAUGUUCAcGAAAAGUCcaacuuCAAGu -3'
miRNA:   3'- -UUGUACAAGUaUUUUUCAGucc---GUUC- -5'
11692 3' -42.1 NC_003102.1 + 136115 0.66 1
Target:  5'- --uGUGUUCGauaaUGAGgcGUCGGGCAu- -3'
miRNA:   3'- uugUACAAGU----AUUUuuCAGUCCGUuc -5'
11692 3' -42.1 NC_003102.1 + 93402 0.66 1
Target:  5'- aGACAcgaaaGUUCGUcGAcGGUCgAGGCGAGa -3'
miRNA:   3'- -UUGUa----CAAGUAuUUuUCAG-UCCGUUC- -5'
11692 3' -42.1 NC_003102.1 + 6245 0.66 1
Target:  5'- gAACAUGUUCGUGA----UCuGGCAc- -3'
miRNA:   3'- -UUGUACAAGUAUUuuucAGuCCGUuc -5'
11692 3' -42.1 NC_003102.1 + 67433 0.66 1
Target:  5'- aAACAUGUUUGcAAAAAGUCAGaCAc- -3'
miRNA:   3'- -UUGUACAAGUaUUUUUCAGUCcGUuc -5'
11692 3' -42.1 NC_003102.1 + 54914 0.67 1
Target:  5'- gAACAUGUUCAUAAAuuG-CuGGCu-- -3'
miRNA:   3'- -UUGUACAAGUAUUUuuCaGuCCGuuc -5'
11692 3' -42.1 NC_003102.1 + 97874 0.67 1
Target:  5'- aAACcUGUcUAUGAAAAGUCAGaCAAGu -3'
miRNA:   3'- -UUGuACAaGUAUUUUUCAGUCcGUUC- -5'
11692 3' -42.1 NC_003102.1 + 61545 0.67 1
Target:  5'- uAUAUGUUUAcAAAAAGUCGGcCAGGu -3'
miRNA:   3'- uUGUACAAGUaUUUUUCAGUCcGUUC- -5'
11692 3' -42.1 NC_003102.1 + 10915 0.66 1
Target:  5'- uAACAUGUUCAcAAAAAGUCAuaCAu- -3'
miRNA:   3'- -UUGUACAAGUaUUUUUCAGUccGUuc -5'
11692 3' -42.1 NC_003102.1 + 26929 0.66 1
Target:  5'- aAACAUGUUUAcGAAAAGUCAuacGGUu-- -3'
miRNA:   3'- -UUGUACAAGUaUUUUUCAGU---CCGuuc -5'
11692 3' -42.1 NC_003102.1 + 6094 0.68 0.999999
Target:  5'- uACGUGacuggUCAUAucuaaucGAGUCAGGCAu- -3'
miRNA:   3'- uUGUACa----AGUAUuu-----UUCAGUCCGUuc -5'
11692 3' -42.1 NC_003102.1 + 56170 0.67 0.999999
Target:  5'- uACAUGUUUAUGAuuuauuuugaAAAGUCGGcCAGGu -3'
miRNA:   3'- uUGUACAAGUAUU----------UUUCAGUCcGUUC- -5'
11692 3' -42.1 NC_003102.1 + 55489 0.68 0.999996
Target:  5'- aAACAUGUUCAcGAAAAGUCcaaCAAGu -3'
miRNA:   3'- -UUGUACAAGUaUUUUUCAGuccGUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.