miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11693 3' -50.2 NC_003102.1 + 47527 0.66 0.995857
Target:  5'- -aCGUCAUCGAauCGGCGUUcCCGUUGu -3'
miRNA:   3'- cgGCGGUAGUU--GCUGUAAcGGCAAUc -5'
11693 3' -50.2 NC_003102.1 + 6719 0.66 0.995857
Target:  5'- uGCCGCCGguguUGGCGcUGCCGa--- -3'
miRNA:   3'- -CGGCGGUaguuGCUGUaACGGCaauc -5'
11693 3' -50.2 NC_003102.1 + 92000 0.66 0.995077
Target:  5'- cGCCGCCAaaacguagaaaacgaCAACGACGaaccggccacggUGCCGgUGGa -3'
miRNA:   3'- -CGGCGGUa--------------GUUGCUGUa-----------ACGGCaAUC- -5'
11693 3' -50.2 NC_003102.1 + 57126 0.66 0.994353
Target:  5'- uGUCGCCAUCAuCGAgacCGUUGuuGacuuUUAGa -3'
miRNA:   3'- -CGGCGGUAGUuGCU---GUAACggC----AAUC- -5'
11693 3' -50.2 NC_003102.1 + 15260 0.66 0.994353
Target:  5'- gGCCGCCG--AAUGuuGUUGgCCGUUAa -3'
miRNA:   3'- -CGGCGGUagUUGCugUAAC-GGCAAUc -5'
11693 3' -50.2 NC_003102.1 + 102874 0.66 0.994353
Target:  5'- cGCCGUCGUCAuuguCGACGUcGUCa---- -3'
miRNA:   3'- -CGGCGGUAGUu---GCUGUAaCGGcaauc -5'
11693 3' -50.2 NC_003102.1 + 83643 0.66 0.99345
Target:  5'- cGCgCGCCAcuUUGGCGACAUgauacGCCuUUAGu -3'
miRNA:   3'- -CG-GCGGU--AGUUGCUGUAa----CGGcAAUC- -5'
11693 3' -50.2 NC_003102.1 + 34894 0.66 0.99345
Target:  5'- aUCGUCGaCGGCGACGUUGUCGc--- -3'
miRNA:   3'- cGGCGGUaGUUGCUGUAACGGCaauc -5'
11693 3' -50.2 NC_003102.1 + 63489 0.66 0.99345
Target:  5'- -gCGUCGUCuGCGGuCGUUGCUGUUcGGg -3'
miRNA:   3'- cgGCGGUAGuUGCU-GUAACGGCAA-UC- -5'
11693 3' -50.2 NC_003102.1 + 28389 0.66 0.99345
Target:  5'- -gCGCCAgu--CGGC--UGCCGUUGGg -3'
miRNA:   3'- cgGCGGUaguuGCUGuaACGGCAAUC- -5'
11693 3' -50.2 NC_003102.1 + 2959 0.66 0.99345
Target:  5'- --gGCCAUCGGCGugAUUGCauacgaacUGUUGa -3'
miRNA:   3'- cggCGGUAGUUGCugUAACG--------GCAAUc -5'
11693 3' -50.2 NC_003102.1 + 32227 0.67 0.9913
Target:  5'- cGCCGacaaCGUCGAUG-CGUUGCCa---- -3'
miRNA:   3'- -CGGCg---GUAGUUGCuGUAACGGcaauc -5'
11693 3' -50.2 NC_003102.1 + 71904 0.67 0.9913
Target:  5'- gGUCGCCGUCGGCGACAagGacagCGg--- -3'
miRNA:   3'- -CGGCGGUAGUUGCUGUaaCg---GCaauc -5'
11693 3' -50.2 NC_003102.1 + 127777 0.67 0.9913
Target:  5'- cGCCGCCGUCGaacACGACAaUGauGa--- -3'
miRNA:   3'- -CGGCGGUAGU---UGCUGUaACggCaauc -5'
11693 3' -50.2 NC_003102.1 + 110504 0.67 0.9913
Target:  5'- -aCGUuuCGUCAACGACGUgGCCGa--- -3'
miRNA:   3'- cgGCG--GUAGUUGCUGUAaCGGCaauc -5'
11693 3' -50.2 NC_003102.1 + 112514 0.67 0.9913
Target:  5'- uGCCGuCCAaaAGCGuguCGUUGCCGa--- -3'
miRNA:   3'- -CGGC-GGUagUUGCu--GUAACGGCaauc -5'
11693 3' -50.2 NC_003102.1 + 31808 0.67 0.990034
Target:  5'- cCCGCUAUC-GCGGCGUacucuUGCCGc--- -3'
miRNA:   3'- cGGCGGUAGuUGCUGUA-----ACGGCaauc -5'
11693 3' -50.2 NC_003102.1 + 29673 0.68 0.983474
Target:  5'- aGUCGgCcgCAAUGGCGgugUGCCGUcUGGa -3'
miRNA:   3'- -CGGCgGuaGUUGCUGUa--ACGGCA-AUC- -5'
11693 3' -50.2 NC_003102.1 + 16901 0.68 0.983474
Target:  5'- cGCCGCUAgcg-UGACAUUGUCGgcGGc -3'
miRNA:   3'- -CGGCGGUaguuGCUGUAACGGCaaUC- -5'
11693 3' -50.2 NC_003102.1 + 106065 0.68 0.981413
Target:  5'- uGCCGUCGUCAuCGACAaUGUCu---- -3'
miRNA:   3'- -CGGCGGUAGUuGCUGUaACGGcaauc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.