miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11694 5' -45.1 NC_003102.1 + 70612 1.17 0.012039
Target:  5'- gCCGAGCAUGAUACAAAACACGAUCGCg -3'
miRNA:   3'- -GGCUCGUACUAUGUUUUGUGCUAGCG- -5'
11694 5' -45.1 NC_003102.1 + 62968 0.8 0.828742
Target:  5'- aCGGGCAgGAUcGCGgacuugGAGCGCGAUCGCg -3'
miRNA:   3'- gGCUCGUaCUA-UGU------UUUGUGCUAGCG- -5'
11694 5' -45.1 NC_003102.1 + 78391 0.77 0.931383
Target:  5'- aCCGAGaCGUGAcagACAAugacGGCguGCGAUCGCg -3'
miRNA:   3'- -GGCUC-GUACUa--UGUU----UUG--UGCUAGCG- -5'
11694 5' -45.1 NC_003102.1 + 80312 0.77 0.936729
Target:  5'- gCUGAGCAUGAUcguCGAcGACAUGGUCGa -3'
miRNA:   3'- -GGCUCGUACUAu--GUU-UUGUGCUAGCg -5'
11694 5' -45.1 NC_003102.1 + 64127 0.77 0.946604
Target:  5'- uUCGAuaGCAcauucucgUGAUACGAAACACGucUCGCg -3'
miRNA:   3'- -GGCU--CGU--------ACUAUGUUUUGUGCu-AGCG- -5'
11694 5' -45.1 NC_003102.1 + 18381 0.76 0.96667
Target:  5'- aUCGAGCAUGAU-Cuug--GCGGUCGCg -3'
miRNA:   3'- -GGCUCGUACUAuGuuuugUGCUAGCG- -5'
11694 5' -45.1 NC_003102.1 + 41383 0.75 0.972959
Target:  5'- gUCGAGCAUGAUucuCAAAuCGCGcAUCaGCg -3'
miRNA:   3'- -GGCUCGUACUAu--GUUUuGUGC-UAG-CG- -5'
11694 5' -45.1 NC_003102.1 + 70796 0.73 0.99229
Target:  5'- aUCGAGgucuuAUACGGGGCGCGAUCGUg -3'
miRNA:   3'- -GGCUCguac-UAUGUUUUGUGCUAGCG- -5'
11694 5' -45.1 NC_003102.1 + 94184 0.72 0.994283
Target:  5'- cUCGGGCAccaugUGGUACG--GCGCGAUCa- -3'
miRNA:   3'- -GGCUCGU-----ACUAUGUuuUGUGCUAGcg -5'
11694 5' -45.1 NC_003102.1 + 126449 0.72 0.99511
Target:  5'- gCGAG-AUGAUgucGCAuuuagAGACACGGUCGUg -3'
miRNA:   3'- gGCUCgUACUA---UGU-----UUUGUGCUAGCG- -5'
11694 5' -45.1 NC_003102.1 + 19996 0.72 0.996475
Target:  5'- aCGAGCGUGAUcucguCAAaaucgGACACGGgcUCGUc -3'
miRNA:   3'- gGCUCGUACUAu----GUU-----UUGUGCU--AGCG- -5'
11694 5' -45.1 NC_003102.1 + 29159 0.72 0.997029
Target:  5'- cUCGuGUcgGuAUAUAAGACGCGAgcgCGCg -3'
miRNA:   3'- -GGCuCGuaC-UAUGUUUUGUGCUa--GCG- -5'
11694 5' -45.1 NC_003102.1 + 84631 0.71 0.997922
Target:  5'- -aGAGCGUca---GGGACGCGGUCGCu -3'
miRNA:   3'- ggCUCGUAcuaugUUUUGUGCUAGCG- -5'
11694 5' -45.1 NC_003102.1 + 29600 0.71 0.997922
Target:  5'- gCUGAGCcgaaucgGCAAucGACAUGAUCGCc -3'
miRNA:   3'- -GGCUCGuacua--UGUU--UUGUGCUAGCG- -5'
11694 5' -45.1 NC_003102.1 + 77649 0.71 0.998579
Target:  5'- uCCGAGCGUGA----GAACuuCGggCGCa -3'
miRNA:   3'- -GGCUCGUACUauguUUUGu-GCuaGCG- -5'
11694 5' -45.1 NC_003102.1 + 140 0.7 0.99903
Target:  5'- aCGAGCGUGAgcuCGAucaccucGACAaguaucUGGUCGCa -3'
miRNA:   3'- gGCUCGUACUau-GUU-------UUGU------GCUAGCG- -5'
11694 5' -45.1 NC_003102.1 + 17189 0.7 0.99905
Target:  5'- gCGGGCAgccUGAUcaGCGAcguGCGCGA-CGCg -3'
miRNA:   3'- gGCUCGU---ACUA--UGUUu--UGUGCUaGCG- -5'
11694 5' -45.1 NC_003102.1 + 94670 0.7 0.999231
Target:  5'- aCGAGCAgcauaaacacaaUGAUcACuauGAACACGAUCa- -3'
miRNA:   3'- gGCUCGU------------ACUA-UGu--UUUGUGCUAGcg -5'
11694 5' -45.1 NC_003102.1 + 101067 0.7 0.999231
Target:  5'- aCCGAGCcgccgucgGUGGUACGAAucaggaACGAUCu- -3'
miRNA:   3'- -GGCUCG--------UACUAUGUUUug----UGCUAGcg -5'
11694 5' -45.1 NC_003102.1 + 16347 0.7 0.999294
Target:  5'- uCCGaAGaCAUGAUGCAauuuauccacacAAACACuucguucuuuuugauGAUCGCg -3'
miRNA:   3'- -GGC-UC-GUACUAUGU------------UUUGUG---------------CUAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.