miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11694 5' -45.1 NC_003102.1 + 140 0.7 0.99903
Target:  5'- aCGAGCGUGAgcuCGAucaccucGACAaguaucUGGUCGCa -3'
miRNA:   3'- gGCUCGUACUau-GUU-------UUGU------GCUAGCG- -5'
11694 5' -45.1 NC_003102.1 + 1269 0.68 0.999889
Target:  5'- gUCGAGCGUGAUagccgaaagcaGCGAGgucAUACGAaacaaCGCg -3'
miRNA:   3'- -GGCUCGUACUA-----------UGUUU---UGUGCUa----GCG- -5'
11694 5' -45.1 NC_003102.1 + 7191 0.66 0.999997
Target:  5'- aCGA-CAUGGcucUACGAcACACGAUCa- -3'
miRNA:   3'- gGCUcGUACU---AUGUUuUGUGCUAGcg -5'
11694 5' -45.1 NC_003102.1 + 15888 0.68 0.999952
Target:  5'- gCCGAuucgAUGGUGgcAAugGCGAUCGCg -3'
miRNA:   3'- -GGCUcg--UACUAUguUUugUGCUAGCG- -5'
11694 5' -45.1 NC_003102.1 + 16347 0.7 0.999294
Target:  5'- uCCGaAGaCAUGAUGCAauuuauccacacAAACACuucguucuuuuugauGAUCGCg -3'
miRNA:   3'- -GGC-UC-GUACUAUGU------------UUUGUG---------------CUAGCG- -5'
11694 5' -45.1 NC_003102.1 + 17189 0.7 0.99905
Target:  5'- gCGGGCAgccUGAUcaGCGAcguGCGCGA-CGCg -3'
miRNA:   3'- gGCUCGU---ACUA--UGUUu--UGUGCUaGCG- -5'
11694 5' -45.1 NC_003102.1 + 17473 0.69 0.999757
Target:  5'- gCGGGUAUGucgaugGCGGGcacgccGCACGAUCGg -3'
miRNA:   3'- gGCUCGUACua----UGUUU------UGUGCUAGCg -5'
11694 5' -45.1 NC_003102.1 + 17794 0.66 0.999998
Target:  5'- aCCGAucGCuAUGAacaGGGGCACGAgCGCu -3'
miRNA:   3'- -GGCU--CG-UACUaugUUUUGUGCUaGCG- -5'
11694 5' -45.1 NC_003102.1 + 18040 0.66 0.999997
Target:  5'- gUCGGGCGUGcUAUGAAcgGgACGAuucUCGCc -3'
miRNA:   3'- -GGCUCGUACuAUGUUU--UgUGCU---AGCG- -5'
11694 5' -45.1 NC_003102.1 + 18381 0.76 0.96667
Target:  5'- aUCGAGCAUGAU-Cuug--GCGGUCGCg -3'
miRNA:   3'- -GGCUCGUACUAuGuuuugUGCUAGCG- -5'
11694 5' -45.1 NC_003102.1 + 19996 0.72 0.996475
Target:  5'- aCGAGCGUGAUcucguCAAaaucgGACACGGgcUCGUc -3'
miRNA:   3'- gGCUCGUACUAu----GUU-----UUGUGCU--AGCG- -5'
11694 5' -45.1 NC_003102.1 + 23185 0.7 0.999505
Target:  5'- uCUGAGCGUGA------ACACG-UCGCa -3'
miRNA:   3'- -GGCUCGUACUauguuuUGUGCuAGCG- -5'
11694 5' -45.1 NC_003102.1 + 23352 0.67 0.999965
Target:  5'- -aGAGCGUaGA-ACAGuuCGCGggCGCg -3'
miRNA:   3'- ggCUCGUA-CUaUGUUuuGUGCuaGCG- -5'
11694 5' -45.1 NC_003102.1 + 29112 0.67 0.999981
Target:  5'- uUGAGCGcgcaaaGAGACACGAUgGCg -3'
miRNA:   3'- gGCUCGUacuaugUUUUGUGCUAgCG- -5'
11694 5' -45.1 NC_003102.1 + 29159 0.72 0.997029
Target:  5'- cUCGuGUcgGuAUAUAAGACGCGAgcgCGCg -3'
miRNA:   3'- -GGCuCGuaC-UAUGUUUUGUGCUa--GCG- -5'
11694 5' -45.1 NC_003102.1 + 29600 0.71 0.997922
Target:  5'- gCUGAGCcgaaucgGCAAucGACAUGAUCGCc -3'
miRNA:   3'- -GGCUCGuacua--UGUU--UUGUGCUAGCG- -5'
11694 5' -45.1 NC_003102.1 + 30032 0.69 0.999811
Target:  5'- aCGGGCAgcuUGAauaUACGAcGCAUaAUCGCg -3'
miRNA:   3'- gGCUCGU---ACU---AUGUUuUGUGcUAGCG- -5'
11694 5' -45.1 NC_003102.1 + 31238 0.69 0.999607
Target:  5'- -aGAGCGUcGAguu-GGACACGAUCGa -3'
miRNA:   3'- ggCUCGUA-CUauguUUUGUGCUAGCg -5'
11694 5' -45.1 NC_003102.1 + 31613 0.68 0.999854
Target:  5'- gCCG-GCG-GGUACGAuagauagccguGACACGAaacggUCGCg -3'
miRNA:   3'- -GGCuCGUaCUAUGUU-----------UUGUGCU-----AGCG- -5'
11694 5' -45.1 NC_003102.1 + 31865 0.66 0.999998
Target:  5'- gCCGAGCAca--ACGAacccGAUACGAcgacgUCGCg -3'
miRNA:   3'- -GGCUCGUacuaUGUU----UUGUGCU-----AGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.