miRNA display CGI


Results 21 - 40 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11694 5' -45.1 NC_003102.1 + 35246 0.67 0.999974
Target:  5'- aCCGA---UGGUACAAgGGCGauCGGUCGCg -3'
miRNA:   3'- -GGCUcguACUAUGUU-UUGU--GCUAGCG- -5'
11694 5' -45.1 NC_003102.1 + 35566 0.7 0.999381
Target:  5'- gCGAGaCAUGAU-CGAAGCcgACGAgauaUCGCc -3'
miRNA:   3'- gGCUC-GUACUAuGUUUUG--UGCU----AGCG- -5'
11694 5' -45.1 NC_003102.1 + 35616 0.66 0.999997
Target:  5'- uCCGGGUGUcggacGAUACGGcAGCAUGGgugUGCg -3'
miRNA:   3'- -GGCUCGUA-----CUAUGUU-UUGUGCUa--GCG- -5'
11694 5' -45.1 NC_003102.1 + 36343 0.69 0.999811
Target:  5'- aUCGGGCAaauUGGUACcgc-CGCGAaCGCa -3'
miRNA:   3'- -GGCUCGU---ACUAUGuuuuGUGCUaGCG- -5'
11694 5' -45.1 NC_003102.1 + 39795 0.66 0.99999
Target:  5'- aUCGAGaCGUGAaACAGAuGCGgCGAcCGCu -3'
miRNA:   3'- -GGCUC-GUACUaUGUUU-UGU-GCUaGCG- -5'
11694 5' -45.1 NC_003102.1 + 40170 0.67 0.999974
Target:  5'- ---uGCAUGAU-CGuuucGAGCACGAUgGCg -3'
miRNA:   3'- ggcuCGUACUAuGU----UUUGUGCUAgCG- -5'
11694 5' -45.1 NC_003102.1 + 41383 0.75 0.972959
Target:  5'- gUCGAGCAUGAUucuCAAAuCGCGcAUCaGCg -3'
miRNA:   3'- -GGCUCGUACUAu--GUUUuGUGC-UAG-CG- -5'
11694 5' -45.1 NC_003102.1 + 46813 0.66 0.99999
Target:  5'- aCGAGgcUGGcgaaaGAGACAUGGUCGCa -3'
miRNA:   3'- gGCUCguACUaug--UUUUGUGCUAGCG- -5'
11694 5' -45.1 NC_003102.1 + 47033 0.67 0.999987
Target:  5'- aCCGuGCccGAUACA-GACGCGuccGUCGa -3'
miRNA:   3'- -GGCuCGuaCUAUGUuUUGUGC---UAGCg -5'
11694 5' -45.1 NC_003102.1 + 53478 0.68 0.999915
Target:  5'- aCGAGCAUcGuAUACGAGACAUccuGUcCGCa -3'
miRNA:   3'- gGCUCGUA-C-UAUGUUUUGUGc--UA-GCG- -5'
11694 5' -45.1 NC_003102.1 + 58325 0.68 0.999854
Target:  5'- aCCGAGCAUGGccaccgguaggGCuucgguGACAaacucauuuuCGAUCGCg -3'
miRNA:   3'- -GGCUCGUACUa----------UGuu----UUGU----------GCUAGCG- -5'
11694 5' -45.1 NC_003102.1 + 62968 0.8 0.828742
Target:  5'- aCGGGCAgGAUcGCGgacuugGAGCGCGAUCGCg -3'
miRNA:   3'- gGCUCGUaCUA-UGU------UUUGUGCUAGCG- -5'
11694 5' -45.1 NC_003102.1 + 64127 0.77 0.946604
Target:  5'- uUCGAuaGCAcauucucgUGAUACGAAACACGucUCGCg -3'
miRNA:   3'- -GGCU--CGU--------ACUAUGUUUUGUGCu-AGCG- -5'
11694 5' -45.1 NC_003102.1 + 65842 0.7 0.999381
Target:  5'- uCCGAGuCGUG-UACGgAGACACGGacuuUCGUu -3'
miRNA:   3'- -GGCUC-GUACuAUGU-UUUGUGCU----AGCG- -5'
11694 5' -45.1 NC_003102.1 + 68233 0.66 0.99999
Target:  5'- gUGAuGCugAUGAUAUAcuuuAGCAUGAUCGUa -3'
miRNA:   3'- gGCU-CG--UACUAUGUu---UUGUGCUAGCG- -5'
11694 5' -45.1 NC_003102.1 + 69528 0.68 0.999936
Target:  5'- gCCGAGUuuuUGGUGCAcgaaguuaacAACGCGcUCGUg -3'
miRNA:   3'- -GGCUCGu--ACUAUGUu---------UUGUGCuAGCG- -5'
11694 5' -45.1 NC_003102.1 + 70453 0.66 0.99999
Target:  5'- aCGAGCAacauGUACAAugacGGCAUG-UCGCu -3'
miRNA:   3'- gGCUCGUac--UAUGUU----UUGUGCuAGCG- -5'
11694 5' -45.1 NC_003102.1 + 70612 1.17 0.012039
Target:  5'- gCCGAGCAUGAUACAAAACACGAUCGCg -3'
miRNA:   3'- -GGCUCGUACUAUGUUUUGUGCUAGCG- -5'
11694 5' -45.1 NC_003102.1 + 70749 0.7 0.999381
Target:  5'- aCCG-GCAUGAgaaucaACGAAGCGCGccaGCu -3'
miRNA:   3'- -GGCuCGUACUa-----UGUUUUGUGCuagCG- -5'
11694 5' -45.1 NC_003102.1 + 70796 0.73 0.99229
Target:  5'- aUCGAGgucuuAUACGGGGCGCGAUCGUg -3'
miRNA:   3'- -GGCUCguac-UAUGUUUUGUGCUAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.