miRNA display CGI


Results 21 - 40 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11694 5' -45.1 NC_003102.1 + 19996 0.72 0.996475
Target:  5'- aCGAGCGUGAUcucguCAAaaucgGACACGGgcUCGUc -3'
miRNA:   3'- gGCUCGUACUAu----GUU-----UUGUGCU--AGCG- -5'
11694 5' -45.1 NC_003102.1 + 77649 0.71 0.998579
Target:  5'- uCCGAGCGUGA----GAACuuCGggCGCa -3'
miRNA:   3'- -GGCUCGUACUauguUUUGu-GCuaGCG- -5'
11694 5' -45.1 NC_003102.1 + 140 0.7 0.99903
Target:  5'- aCGAGCGUGAgcuCGAucaccucGACAaguaucUGGUCGCa -3'
miRNA:   3'- gGCUCGUACUau-GUU-------UUGU------GCUAGCG- -5'
11694 5' -45.1 NC_003102.1 + 17189 0.7 0.99905
Target:  5'- gCGGGCAgccUGAUcaGCGAcguGCGCGA-CGCg -3'
miRNA:   3'- gGCUCGU---ACUA--UGUUu--UGUGCUaGCG- -5'
11694 5' -45.1 NC_003102.1 + 65842 0.7 0.999381
Target:  5'- uCCGAGuCGUG-UACGgAGACACGGacuuUCGUu -3'
miRNA:   3'- -GGCUC-GUACuAUGU-UUUGUGCU----AGCG- -5'
11694 5' -45.1 NC_003102.1 + 35566 0.7 0.999381
Target:  5'- gCGAGaCAUGAU-CGAAGCcgACGAgauaUCGCc -3'
miRNA:   3'- gGCUC-GUACUAuGUUUUG--UGCU----AGCG- -5'
11694 5' -45.1 NC_003102.1 + 123256 0.68 0.999854
Target:  5'- gCCGAGCAgaUGGUGCAuacGAugAUGAacUGCc -3'
miRNA:   3'- -GGCUCGU--ACUAUGU---UUugUGCUa-GCG- -5'
11694 5' -45.1 NC_003102.1 + 36343 0.69 0.999811
Target:  5'- aUCGGGCAaauUGGUACcgc-CGCGAaCGCa -3'
miRNA:   3'- -GGCUCGU---ACUAUGuuuuGUGCUaGCG- -5'
11694 5' -45.1 NC_003102.1 + 30032 0.69 0.999811
Target:  5'- aCGGGCAgcuUGAauaUACGAcGCAUaAUCGCg -3'
miRNA:   3'- gGCUCGU---ACU---AUGUUuUGUGcUAGCG- -5'
11694 5' -45.1 NC_003102.1 + 102960 0.69 0.999597
Target:  5'- aCCGGuGuCGUGAUGCAuugugagAAACGucCGAUCGUg -3'
miRNA:   3'- -GGCU-C-GUACUAUGU-------UUUGU--GCUAGCG- -5'
11694 5' -45.1 NC_003102.1 + 74352 0.7 0.999505
Target:  5'- uCCGAGCGUcGAUGCGAAAUgauaaauccguGCgugGAUCGa -3'
miRNA:   3'- -GGCUCGUA-CUAUGUUUUG-----------UG---CUAGCg -5'
11694 5' -45.1 NC_003102.1 + 23185 0.7 0.999505
Target:  5'- uCUGAGCGUGA------ACACG-UCGCa -3'
miRNA:   3'- -GGCUCGUACUauguuuUGUGCuAGCG- -5'
11694 5' -45.1 NC_003102.1 + 70453 0.66 0.99999
Target:  5'- aCGAGCAacauGUACAAugacGGCAUG-UCGCu -3'
miRNA:   3'- gGCUCGUac--UAUGUU----UUGUGCuAGCG- -5'
11694 5' -45.1 NC_003102.1 + 107489 0.66 0.999995
Target:  5'- gCG-GCAUGAUGCuGAGCAaguacgGAUUGUc -3'
miRNA:   3'- gGCuCGUACUAUGuUUUGUg-----CUAGCG- -5'
11694 5' -45.1 NC_003102.1 + 135101 0.66 0.999997
Target:  5'- aCCGuccaaCAUGAUGCGcuuGGCcguuuCGAUCGCc -3'
miRNA:   3'- -GGCuc---GUACUAUGUu--UUGu----GCUAGCG- -5'
11694 5' -45.1 NC_003102.1 + 117654 0.66 0.999997
Target:  5'- aCCGcuggaaaaAGCcgucUGGUACAcgGAACACG-UCGCc -3'
miRNA:   3'- -GGC--------UCGu---ACUAUGU--UUUGUGCuAGCG- -5'
11694 5' -45.1 NC_003102.1 + 72320 0.66 0.999998
Target:  5'- gUCGcGCuucaGUACAugaucgcGGACGCGAUCGCc -3'
miRNA:   3'- -GGCuCGuac-UAUGU-------UUUGUGCUAGCG- -5'
11694 5' -45.1 NC_003102.1 + 31865 0.66 0.999998
Target:  5'- gCCGAGCAca--ACGAacccGAUACGAcgacgUCGCg -3'
miRNA:   3'- -GGCUCGUacuaUGUU----UUGUGCU-----AGCG- -5'
11694 5' -45.1 NC_003102.1 + 131429 0.66 0.999998
Target:  5'- aCCGuGCAcGAUcacCGAAGucuCGCGGUUGCa -3'
miRNA:   3'- -GGCuCGUaCUAu--GUUUU---GUGCUAGCG- -5'
11694 5' -45.1 NC_003102.1 + 62968 0.8 0.828742
Target:  5'- aCGGGCAgGAUcGCGgacuugGAGCGCGAUCGCg -3'
miRNA:   3'- gGCUCGUaCUA-UGU------UUUGUGCUAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.