miRNA display CGI


Results 21 - 40 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11694 5' -45.1 NC_003102.1 + 65842 0.7 0.999381
Target:  5'- uCCGAGuCGUG-UACGgAGACACGGacuuUCGUu -3'
miRNA:   3'- -GGCUC-GUACuAUGU-UUUGUGCU----AGCG- -5'
11694 5' -45.1 NC_003102.1 + 35566 0.7 0.999381
Target:  5'- gCGAGaCAUGAU-CGAAGCcgACGAgauaUCGCc -3'
miRNA:   3'- gGCUC-GUACUAuGUUUUG--UGCU----AGCG- -5'
11694 5' -45.1 NC_003102.1 + 70749 0.7 0.999381
Target:  5'- aCCG-GCAUGAgaaucaACGAAGCGCGccaGCu -3'
miRNA:   3'- -GGCuCGUACUa-----UGUUUUGUGCuagCG- -5'
11694 5' -45.1 NC_003102.1 + 134930 0.7 0.999505
Target:  5'- gCCGAcGCcgGcggGCAGcACgACGGUCGCa -3'
miRNA:   3'- -GGCU-CGuaCua-UGUUuUG-UGCUAGCG- -5'
11694 5' -45.1 NC_003102.1 + 23185 0.7 0.999505
Target:  5'- uCUGAGCGUGA------ACACG-UCGCa -3'
miRNA:   3'- -GGCUCGUACUauguuuUGUGCuAGCG- -5'
11694 5' -45.1 NC_003102.1 + 74352 0.7 0.999505
Target:  5'- uCCGAGCGUcGAUGCGAAAUgauaaauccguGCgugGAUCGa -3'
miRNA:   3'- -GGCUCGUA-CUAUGUUUUG-----------UG---CUAGCg -5'
11694 5' -45.1 NC_003102.1 + 102960 0.69 0.999597
Target:  5'- aCCGGuGuCGUGAUGCAuugugagAAACGucCGAUCGUg -3'
miRNA:   3'- -GGCU-C-GUACUAUGU-------UUUGU--GCUAGCG- -5'
11694 5' -45.1 NC_003102.1 + 100399 0.69 0.999607
Target:  5'- aUCGuGCuAUGuagaagACA--GCACGAUCGCg -3'
miRNA:   3'- -GGCuCG-UACua----UGUuuUGUGCUAGCG- -5'
11694 5' -45.1 NC_003102.1 + 31238 0.69 0.999607
Target:  5'- -aGAGCGUcGAguu-GGACACGAUCGa -3'
miRNA:   3'- ggCUCGUA-CUauguUUUGUGCUAGCg -5'
11694 5' -45.1 NC_003102.1 + 88799 0.69 0.99969
Target:  5'- aCGAGCAUGAgcgACGAu-UACGAgUGUa -3'
miRNA:   3'- gGCUCGUACUa--UGUUuuGUGCUaGCG- -5'
11694 5' -45.1 NC_003102.1 + 17473 0.69 0.999757
Target:  5'- gCGGGUAUGucgaugGCGGGcacgccGCACGAUCGg -3'
miRNA:   3'- gGCUCGUACua----UGUUU------UGUGCUAGCg -5'
11694 5' -45.1 NC_003102.1 + 36343 0.69 0.999811
Target:  5'- aUCGGGCAaauUGGUACcgc-CGCGAaCGCa -3'
miRNA:   3'- -GGCUCGU---ACUAUGuuuuGUGCUaGCG- -5'
11694 5' -45.1 NC_003102.1 + 30032 0.69 0.999811
Target:  5'- aCGGGCAgcuUGAauaUACGAcGCAUaAUCGCg -3'
miRNA:   3'- gGCUCGU---ACU---AUGUUuUGUGcUAGCG- -5'
11694 5' -45.1 NC_003102.1 + 97320 0.68 0.999854
Target:  5'- aUCGAGUAUuGUGCAAGACGgGAacCGUg -3'
miRNA:   3'- -GGCUCGUAcUAUGUUUUGUgCUa-GCG- -5'
11694 5' -45.1 NC_003102.1 + 31613 0.68 0.999854
Target:  5'- gCCG-GCG-GGUACGAuagauagccguGACACGAaacggUCGCg -3'
miRNA:   3'- -GGCuCGUaCUAUGUU-----------UUGUGCU-----AGCG- -5'
11694 5' -45.1 NC_003102.1 + 58325 0.68 0.999854
Target:  5'- aCCGAGCAUGGccaccgguaggGCuucgguGACAaacucauuuuCGAUCGCg -3'
miRNA:   3'- -GGCUCGUACUa----------UGuu----UUGU----------GCUAGCG- -5'
11694 5' -45.1 NC_003102.1 + 123256 0.68 0.999854
Target:  5'- gCCGAGCAgaUGGUGCAuacGAugAUGAacUGCc -3'
miRNA:   3'- -GGCUCGU--ACUAUGU---UUugUGCUa-GCG- -5'
11694 5' -45.1 NC_003102.1 + 1269 0.68 0.999889
Target:  5'- gUCGAGCGUGAUagccgaaagcaGCGAGgucAUACGAaacaaCGCg -3'
miRNA:   3'- -GGCUCGUACUA-----------UGUUU---UGUGCUa----GCG- -5'
11694 5' -45.1 NC_003102.1 + 86167 0.68 0.999889
Target:  5'- aCGAGCGUGAUggucuugacGCAAuuGACGCccaagCGCu -3'
miRNA:   3'- gGCUCGUACUA---------UGUU--UUGUGcua--GCG- -5'
11694 5' -45.1 NC_003102.1 + 53478 0.68 0.999915
Target:  5'- aCGAGCAUcGuAUACGAGACAUccuGUcCGCa -3'
miRNA:   3'- gGCUCGUA-C-UAUGUUUUGUGc--UA-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.