miRNA display CGI


Results 21 - 40 of 76 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11694 5' -45.1 NC_003102.1 + 47033 0.67 0.999987
Target:  5'- aCCGuGCccGAUACA-GACGCGuccGUCGa -3'
miRNA:   3'- -GGCuCGuaCUAUGUuUUGUGC---UAGCg -5'
11694 5' -45.1 NC_003102.1 + 77982 0.67 0.999981
Target:  5'- uCCu-GCGUcGGUAuCAGGAUGCGAUCGUu -3'
miRNA:   3'- -GGcuCGUA-CUAU-GUUUUGUGCUAGCG- -5'
11694 5' -45.1 NC_003102.1 + 112513 0.67 0.999981
Target:  5'- gCCGuccaaaAGCGUGucguUGCcGAACGCGAUCu- -3'
miRNA:   3'- -GGC------UCGUACu---AUGuUUUGUGCUAGcg -5'
11694 5' -45.1 NC_003102.1 + 29112 0.67 0.999981
Target:  5'- uUGAGCGcgcaaaGAGACACGAUgGCg -3'
miRNA:   3'- gGCUCGUacuaugUUUUGUGCUAgCG- -5'
11694 5' -45.1 NC_003102.1 + 91725 0.67 0.999974
Target:  5'- aCCGAaaGUAUGGUAUAGugaacgugucACACGAaccgcuUCGCg -3'
miRNA:   3'- -GGCU--CGUACUAUGUUu---------UGUGCU------AGCG- -5'
11694 5' -45.1 NC_003102.1 + 88045 0.67 0.999974
Target:  5'- aUCGAGCGgcgaUGGUAgAAGGCGuCGAagcCGCa -3'
miRNA:   3'- -GGCUCGU----ACUAUgUUUUGU-GCUa--GCG- -5'
11694 5' -45.1 NC_003102.1 + 116260 0.67 0.999974
Target:  5'- gUGGGCGUGAaACGuAugGCGAaaGCa -3'
miRNA:   3'- gGCUCGUACUaUGUuUugUGCUagCG- -5'
11694 5' -45.1 NC_003102.1 + 40170 0.67 0.999974
Target:  5'- ---uGCAUGAU-CGuuucGAGCACGAUgGCg -3'
miRNA:   3'- ggcuCGUACUAuGU----UUUGUGCUAgCG- -5'
11694 5' -45.1 NC_003102.1 + 79487 0.67 0.999974
Target:  5'- gCGAGUGUGAgucGCuuaaacuguuAGGCAauCGAUCGCg -3'
miRNA:   3'- gGCUCGUACUa--UGu---------UUUGU--GCUAGCG- -5'
11694 5' -45.1 NC_003102.1 + 35246 0.67 0.999974
Target:  5'- aCCGA---UGGUACAAgGGCGauCGGUCGCg -3'
miRNA:   3'- -GGCUcguACUAUGUU-UUGU--GCUAGCG- -5'
11694 5' -45.1 NC_003102.1 + 23352 0.67 0.999965
Target:  5'- -aGAGCGUaGA-ACAGuuCGCGggCGCg -3'
miRNA:   3'- ggCUCGUA-CUaUGUUuuGUGCuaGCG- -5'
11694 5' -45.1 NC_003102.1 + 15888 0.68 0.999952
Target:  5'- gCCGAuucgAUGGUGgcAAugGCGAUCGCg -3'
miRNA:   3'- -GGCUcg--UACUAUguUUugUGCUAGCG- -5'
11694 5' -45.1 NC_003102.1 + 136453 0.68 0.999943
Target:  5'- uCCGuacgguucgaaugaaGGCA-GAUGCGAuuGACGCaGAUCGUa -3'
miRNA:   3'- -GGC---------------UCGUaCUAUGUU--UUGUG-CUAGCG- -5'
11694 5' -45.1 NC_003102.1 + 74200 0.68 0.999936
Target:  5'- -aGAGCAUGAU-CGacGAACugGucuugaaucAUCGCg -3'
miRNA:   3'- ggCUCGUACUAuGU--UUUGugC---------UAGCG- -5'
11694 5' -45.1 NC_003102.1 + 109152 0.68 0.999936
Target:  5'- aCUuGGCAuuuUGAUAUAAAACA-GAUCGUc -3'
miRNA:   3'- -GGcUCGU---ACUAUGUUUUGUgCUAGCG- -5'
11694 5' -45.1 NC_003102.1 + 69528 0.68 0.999936
Target:  5'- gCCGAGUuuuUGGUGCAcgaaguuaacAACGCGcUCGUg -3'
miRNA:   3'- -GGCUCGu--ACUAUGUu---------UUGUGCuAGCG- -5'
11694 5' -45.1 NC_003102.1 + 53478 0.68 0.999915
Target:  5'- aCGAGCAUcGuAUACGAGACAUccuGUcCGCa -3'
miRNA:   3'- gGCUCGUA-C-UAUGUUUUGUGc--UA-GCG- -5'
11694 5' -45.1 NC_003102.1 + 1269 0.68 0.999889
Target:  5'- gUCGAGCGUGAUagccgaaagcaGCGAGgucAUACGAaacaaCGCg -3'
miRNA:   3'- -GGCUCGUACUA-----------UGUUU---UGUGCUa----GCG- -5'
11694 5' -45.1 NC_003102.1 + 86167 0.68 0.999889
Target:  5'- aCGAGCGUGAUggucuugacGCAAuuGACGCccaagCGCu -3'
miRNA:   3'- gGCUCGUACUA---------UGUU--UUGUGcua--GCG- -5'
11694 5' -45.1 NC_003102.1 + 123256 0.68 0.999854
Target:  5'- gCCGAGCAgaUGGUGCAuacGAugAUGAacUGCc -3'
miRNA:   3'- -GGCUCGU--ACUAUGU---UUugUGCUa-GCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.