Results 21 - 40 of 76 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
11694 | 5' | -45.1 | NC_003102.1 | + | 121122 | 0.67 | 0.999987 |
Target: 5'- gCCGuGCGgcAUGCAGccaacuGGCACG-UCGCa -3' miRNA: 3'- -GGCuCGUacUAUGUU------UUGUGCuAGCG- -5' |
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11694 | 5' | -45.1 | NC_003102.1 | + | 29112 | 0.67 | 0.999981 |
Target: 5'- uUGAGCGcgcaaaGAGACACGAUgGCg -3' miRNA: 3'- gGCUCGUacuaugUUUUGUGCUAgCG- -5' |
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11694 | 5' | -45.1 | NC_003102.1 | + | 112513 | 0.67 | 0.999981 |
Target: 5'- gCCGuccaaaAGCGUGucguUGCcGAACGCGAUCu- -3' miRNA: 3'- -GGC------UCGUACu---AUGuUUUGUGCUAGcg -5' |
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11694 | 5' | -45.1 | NC_003102.1 | + | 77982 | 0.67 | 0.999981 |
Target: 5'- uCCu-GCGUcGGUAuCAGGAUGCGAUCGUu -3' miRNA: 3'- -GGcuCGUA-CUAU-GUUUUGUGCUAGCG- -5' |
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11694 | 5' | -45.1 | NC_003102.1 | + | 88045 | 0.67 | 0.999974 |
Target: 5'- aUCGAGCGgcgaUGGUAgAAGGCGuCGAagcCGCa -3' miRNA: 3'- -GGCUCGU----ACUAUgUUUUGU-GCUa--GCG- -5' |
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11694 | 5' | -45.1 | NC_003102.1 | + | 116260 | 0.67 | 0.999974 |
Target: 5'- gUGGGCGUGAaACGuAugGCGAaaGCa -3' miRNA: 3'- gGCUCGUACUaUGUuUugUGCUagCG- -5' |
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11694 | 5' | -45.1 | NC_003102.1 | + | 40170 | 0.67 | 0.999974 |
Target: 5'- ---uGCAUGAU-CGuuucGAGCACGAUgGCg -3' miRNA: 3'- ggcuCGUACUAuGU----UUUGUGCUAgCG- -5' |
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11694 | 5' | -45.1 | NC_003102.1 | + | 91725 | 0.67 | 0.999974 |
Target: 5'- aCCGAaaGUAUGGUAUAGugaacgugucACACGAaccgcuUCGCg -3' miRNA: 3'- -GGCU--CGUACUAUGUUu---------UGUGCU------AGCG- -5' |
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11694 | 5' | -45.1 | NC_003102.1 | + | 35246 | 0.67 | 0.999974 |
Target: 5'- aCCGA---UGGUACAAgGGCGauCGGUCGCg -3' miRNA: 3'- -GGCUcguACUAUGUU-UUGU--GCUAGCG- -5' |
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11694 | 5' | -45.1 | NC_003102.1 | + | 79487 | 0.67 | 0.999974 |
Target: 5'- gCGAGUGUGAgucGCuuaaacuguuAGGCAauCGAUCGCg -3' miRNA: 3'- gGCUCGUACUa--UGu---------UUUGU--GCUAGCG- -5' |
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11694 | 5' | -45.1 | NC_003102.1 | + | 23352 | 0.67 | 0.999965 |
Target: 5'- -aGAGCGUaGA-ACAGuuCGCGggCGCg -3' miRNA: 3'- ggCUCGUA-CUaUGUUuuGUGCuaGCG- -5' |
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11694 | 5' | -45.1 | NC_003102.1 | + | 15888 | 0.68 | 0.999952 |
Target: 5'- gCCGAuucgAUGGUGgcAAugGCGAUCGCg -3' miRNA: 3'- -GGCUcg--UACUAUguUUugUGCUAGCG- -5' |
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11694 | 5' | -45.1 | NC_003102.1 | + | 136453 | 0.68 | 0.999943 |
Target: 5'- uCCGuacgguucgaaugaaGGCA-GAUGCGAuuGACGCaGAUCGUa -3' miRNA: 3'- -GGC---------------UCGUaCUAUGUU--UUGUG-CUAGCG- -5' |
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11694 | 5' | -45.1 | NC_003102.1 | + | 74200 | 0.68 | 0.999936 |
Target: 5'- -aGAGCAUGAU-CGacGAACugGucuugaaucAUCGCg -3' miRNA: 3'- ggCUCGUACUAuGU--UUUGugC---------UAGCG- -5' |
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11694 | 5' | -45.1 | NC_003102.1 | + | 69528 | 0.68 | 0.999936 |
Target: 5'- gCCGAGUuuuUGGUGCAcgaaguuaacAACGCGcUCGUg -3' miRNA: 3'- -GGCUCGu--ACUAUGUu---------UUGUGCuAGCG- -5' |
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11694 | 5' | -45.1 | NC_003102.1 | + | 109152 | 0.68 | 0.999936 |
Target: 5'- aCUuGGCAuuuUGAUAUAAAACA-GAUCGUc -3' miRNA: 3'- -GGcUCGU---ACUAUGUUUUGUgCUAGCG- -5' |
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11694 | 5' | -45.1 | NC_003102.1 | + | 53478 | 0.68 | 0.999915 |
Target: 5'- aCGAGCAUcGuAUACGAGACAUccuGUcCGCa -3' miRNA: 3'- gGCUCGUA-C-UAUGUUUUGUGc--UA-GCG- -5' |
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11694 | 5' | -45.1 | NC_003102.1 | + | 86167 | 0.68 | 0.999889 |
Target: 5'- aCGAGCGUGAUggucuugacGCAAuuGACGCccaagCGCu -3' miRNA: 3'- gGCUCGUACUA---------UGUU--UUGUGcua--GCG- -5' |
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11694 | 5' | -45.1 | NC_003102.1 | + | 1269 | 0.68 | 0.999889 |
Target: 5'- gUCGAGCGUGAUagccgaaagcaGCGAGgucAUACGAaacaaCGCg -3' miRNA: 3'- -GGCUCGUACUA-----------UGUUU---UGUGCUa----GCG- -5' |
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11694 | 5' | -45.1 | NC_003102.1 | + | 123256 | 0.68 | 0.999854 |
Target: 5'- gCCGAGCAgaUGGUGCAuacGAugAUGAacUGCc -3' miRNA: 3'- -GGCUCGU--ACUAUGU---UUugUGCUa-GCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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